Literature DB >> 34468181

Viruses Defined by the Position of the Virosphere within the Replicator Space.

Eugene V Koonin1, Valerian V Dolja2, Mart Krupovic3, Jens H Kuhn4.   

Abstract

Originally, viruses were defined as miniscule infectious agents that passed through filters that retain even the smallest cells. Subsequently, viruses were considered obligate intracellular parasites whose reproduction depends on their cellular hosts for energy supply and molecular building blocks. However, these features are insufficient to unambiguously define viruses as they are broadly understood today. We outline possible approaches to define viruses and explore the boundaries of the virosphere within the virtual space of replicators and the relationships between viruses and other types of replicators. Regardless of how, exactly, viruses are defined, viruses clearly have evolved on many occasions from nonviral replicators, such as plasmids, by recruiting host proteins to become virion components. Conversely, other types of replicators have repeatedly evolved from viruses. Thus, the virosphere is a dynamic entity with extensive evolutionary traffic across its boundaries. We argue that the virosphere proper, here termed orthovirosphere, consists of a distinct variety of replicators that encode structural proteins encasing the replicators' genomes, thereby providing protection and facilitating transmission among hosts. Numerous and diverse replicators, such as virus-derived but capsidless RNA and DNA elements, or defective viruses occupy the zone surrounding the orthovirosphere in the virtual replicator space. We define this zone as the perivirosphere. Although intense debates on the nature of certain replicators that adorn the internal and external boundaries of the virosphere will likely continue, we present an operational definition of virus that recently has been accepted by the International Committee on Taxonomy of Viruses.

Entities:  

Keywords:  MGE; mobile genetic element; orthovirosphere; perivirosphere; replicator; virosphere; virus; virus classification; virus definition; virus taxonomy

Mesh:

Substances:

Year:  2021        PMID: 34468181      PMCID: PMC8483706          DOI: 10.1128/MMBR.00193-20

Source DB:  PubMed          Journal:  Microbiol Mol Biol Rev        ISSN: 1092-2172            Impact factor:   13.044


  8 in total

1.  Viruses direct carbon cycling in lake sediments under global change.

Authors:  Lucas P P Braga; Chloé Orland; Erik J S Emilson; Amelia A Fitch; Helena Osterholz; Thorsten Dittmar; Nathan Basiliko; Nadia C S Mykytczuk; Andrew J Tanentzap
Journal:  Proc Natl Acad Sci U S A       Date:  2022-10-07       Impact factor: 12.779

Review 2.  Viral histones: pickpocket's prize or primordial progenitor?

Authors:  Paul B Talbert; Karim-Jean Armache; Steven Henikoff
Journal:  Epigenetics Chromatin       Date:  2022-05-28       Impact factor: 5.465

Review 3.  Jingchuvirales: a New Taxonomical Framework for a Rapidly Expanding Order of Unusual Monjiviricete Viruses Broadly Distributed among Arthropod Subphyla.

Authors:  Nicholas Di Paola; Jens H Kuhn; Nolwenn M Dheilly; Sandra Junglen; Sofia Paraskevopoulou; Thomas S Postler; Mang Shi
Journal:  Appl Environ Microbiol       Date:  2022-02-02       Impact factor: 5.005

Review 4.  Visualising Viruses.

Authors:  Annabel Slater; Naina Nair; Rachael Suétt; Rian Mac Donnchadha; Connor Bamford; Seema Jasim; Daniel Livingstone; Edward Hutchinson
Journal:  J Gen Virol       Date:  2022-01       Impact factor: 3.891

5.  Cellular homologs of the double jelly-roll major capsid proteins clarify the origins of an ancient virus kingdom.

Authors:  Mart Krupovic; Kira S Makarova; Eugene V Koonin
Journal:  Proc Natl Acad Sci U S A       Date:  2022-02-01       Impact factor: 11.205

6.  Viruses of Atlantic Bonefish (Albula vulpes) in Florida and the Caribbean show geographic patterns consistent with population declines.

Authors:  Lewis J Campbell; Nicholas A Castillo; Christopher D Dunn; Addiel Perez; Juan J Schmitter-Soto; Sahar C Mejri; Ross E Boucek; Rolando Santos Corujo; Aaron J Adams; Jennifer S Rehage; Tony L Goldberg
Journal:  Environ Biol Fishes       Date:  2022-08-05       Impact factor: 1.798

7.  NeoRdRp: A Comprehensive Dataset for Identifying RNA-dependent RNA Polymerases of Various RNA Viruses from Metatranscriptomic Data.

Authors:  Shoichi Sakaguchi; Syun-Ichi Urayama; Yoshihiro Takaki; Kensuke Hirosuna; Hong Wu; Youichi Suzuki; Takuro Nunoura; Takashi Nakano; So Nakagawa
Journal:  Microbes Environ       Date:  2022       Impact factor: 2.596

8.  Viroids and Viroid-like Circular RNAs: Do They Descend from Primordial Replicators?

Authors:  Benjamin D Lee; Eugene V Koonin
Journal:  Life (Basel)       Date:  2022-01-12
  8 in total

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