Literature DB >> 34456066

Mining museums for historical DNA: advances and challenges in museomics.

Christopher J Raxworthy1, Brian Tilston Smith2.   

Abstract

Historical DNA (hDNA), obtained from museum and herbarium specimens, has yielded spectacular new insights into the history of organisms. This includes documenting historical genetic erosion and extinction, discovering species new to science, resolving evolutionary relationships, investigating epigenetic effects, and determining origins of infectious diseases. However, the development of best-practices in isolating, processing, and analyzing hDNA remain under-explored, due to the substantial diversity of specimen preparation types, tissue sources, archival ages, and collecting histories. Thus, for hDNA to reach its full potential, and justify the destructive sampling of the rarest specimens, more experimental work using time-series collections, and the development of improved methods to correct for data asymmetries and biases due to DNA degradation are required.
Copyright © 2021 The Author(s). Published by Elsevier Ltd.. All rights reserved.

Entities:  

Keywords:  DNA degradation; ancient DNA; bioinformatics; collections; historical DNA; museomics

Mesh:

Substances:

Year:  2021        PMID: 34456066     DOI: 10.1016/j.tree.2021.07.009

Source DB:  PubMed          Journal:  Trends Ecol Evol        ISSN: 0169-5347            Impact factor:   17.712


  8 in total

1.  Ancient DNA extraction methods for herbarium specimens: When is it worth the effort?

Authors:  Pia Marinček; Natascha D Wagner; Salvatore Tomasello
Journal:  Appl Plant Sci       Date:  2022-06-15       Impact factor: 2.511

2.  A double-edged sword: parental care increases risk of offspring infection by a maternally vectored parasite.

Authors:  Rebecca Jean A Millena; Jay A Rosenheim
Journal:  Biol Lett       Date:  2022-06-01       Impact factor: 3.812

3.  Development of a system for the automated identification of herbarium specimens with high accuracy.

Authors:  Masato Shirai; Atsuko Takano; Takahide Kurosawa; Masahito Inoue; Shuichiro Tagane; Tomoya Tanimoto; Tohru Koganeyama; Hirayuki Sato; Tomohiko Terasawa; Takehito Horie; Isao Mandai; Takashi Akihiro
Journal:  Sci Rep       Date:  2022-05-16       Impact factor: 4.996

4.  Phylogenomics and Diversification of the Schistosomatidae Based on Targeted Sequence Capture of Ultra-Conserved Elements.

Authors:  Erika T Ebbs; Eric S Loker; Lijing Bu; Sean A Locke; Vasyl V Tkach; Ramesh Devkota; Veronica R Flores; Hudson A Pinto; Sara V Brant
Journal:  Pathogens       Date:  2022-07-05

5.  Spatiotemporal monitoring of the rare northern dragonhead (Dracocephalum ruyschiana, Lamiaceae) - SNP genotyping and environmental niche modeling herbarium specimens.

Authors:  Malene Nygaard; Alexander Kopatz; James M D Speed; Michael D Martin; Tommy Prestø; Oddmund Kleven; Mika Bendiksby
Journal:  Ecol Evol       Date:  2022-08-12       Impact factor: 3.167

6.  Neogastropod (Mollusca, Gastropoda) phylogeny: A step forward with mitogenomes.

Authors:  Thomas Lemarcis; Alexander E Fedosov; Yuri I Kantor; Jawad Abdelkrim; Paul Zaharias; Nicolas Puillandre
Journal:  Zool Scr       Date:  2022-06-29       Impact factor: 3.185

7.  A guide to avian museomics: Insights gained from resequencing hundreds of avian study skins.

Authors:  Martin Irestedt; Filip Thörn; Ingo A Müller; Knud A Jønsson; Per G P Ericson; Mozes P K Blom
Journal:  Mol Ecol Resour       Date:  2022-06-23       Impact factor: 8.678

8.  EBP-Colombia and the bioeconomy: Genomics in the service of biodiversity conservation and sustainable development.

Authors:  Joseph E A Huddart; Andrew J Crawford; Arturo L Luna-Tapia; Silvia Restrepo; Federica Di Palma
Journal:  Proc Natl Acad Sci U S A       Date:  2022-01-25       Impact factor: 11.205

  8 in total

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