Literature DB >> 34448161

MapMan Visualization of RNA-Seq Data Using Mercator4 Functional Annotations.

Marie Bolger1, Rainer Schwacke2, Björn Usadel2.   

Abstract

Plant omics research has advanced to the stage where it is feasible to generate data from multiple samples and multiple time points to gain insight into biological processes. This impressive array of data can prove challenging to interpret. In this chapter, we describe a solution to this problem, consisting of the MapMan transcript visualization application and the associated MapMan4 ontology and Mercator4 online annotation process.
© 2021. Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Functional annotation; MapMan; Mercator4; RNA-Seq visualization; Web-based tool

Mesh：

Year:  2021        PMID： 34448161     DOI： 10.1007/978-1-0716-1609-3_9

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  1 in total

1.  Plant genome and transcriptome annotations: from misconceptions to simple solutions.

Authors:  Marie E Bolger; Borjana Arsova; Björn Usadel
Journal:  Brief Bioinform       Date:  2018-05-01       Impact factor: 11.622
  1 in total
  3 in total

1.  Transcriptome Analysis to Identify Genes Related to Flowering Reversion in Tomato.

Authors:  Yaoguang Sun; Wenhui Yang; Jinxiu Chen; Dexia Chen; Huanhuan Yang; Xiangyang Xu
Journal:  Int J Mol Sci       Date:  2022-08-12       Impact factor: 6.208

2.  Inhibition of the Glycogen Synthase Kinase 3 Family by the Bikinin Alleviates the Long-Term Effects of Salinity in Barley.

Authors:  Jolanta Groszyk; Mateusz Przyborowski
Journal:  Int J Mol Sci       Date:  2022-10-01       Impact factor: 6.208

3.  GXP: Analyze and Plot Plant Omics Data in Web Browsers.

Authors:  Constantin Eiteneuer; David Velasco; Joseph Atemia; Dan Wang; Rainer Schwacke; Vanessa Wahl; Andrea Schrader; Julia J Reimer; Sven Fahrner; Roland Pieruschka; Ulrich Schurr; Björn Usadel; Asis Hallab
Journal:  Plants (Basel)       Date:  2022-03-11
  3 in total

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