Erik Jacobsson1, Steve Peigneur2, Håkan S Andersson1,3, Quentin Laborde1, Malin Strand4, Jan Tytgat2, Ulf Göransson1. 1. Pharmacognosy, Department of Pharmaceutical Biosciences, Biomedical Center, Uppsala University, Box 591, SE-751 24, Uppsala, Sweden. 2. Toxicology & Pharmacology, University of Leuven (KU Leuven), O&N 2, PO Box 992, Herestraat 49, 3000, Leuven, Belgium. 3. Department of Medical Biochemistry and Biophysics, Karolinska Institutet, 17177 Stockholm, Sweden. 4. Swedish Species Information Centre, Swedish University of Agricultural Sciences, 75007 Uppsala, Sweden.
Abstract
Peptide toxins find use in medicine, biotechnology, and agriculture. They are exploited as pharmaceutical tools, particularly for the investigation of ion channels. Here, we report the synthesis and activity of a novel family of peptide toxins: the cystine-knotted α nemertides. Following the prototypic α-1 and -2 (1 and 2), six more nemertides were discovered by mining of available nemertean transcriptomes. Here, we describe their synthesis using solid phase peptide chemistry and their oxidative folding by using an improved protocol. Nemertides α-2 to α-7 (2-7) were produced to characterize their effect on voltage-gated sodium channels (Blatella germanica BgNaV1 and mammalian NaVs1.1-1.8). In addition, ion channel activities were matched to in vivo tests using an Artemia microwell assay. Although nemertides demonstrate high sequence similarity, they display variability in activity on the tested NaVs. The nemertides are all highly toxic to Artemia, with EC50 values in the sub-low micromolar range, and all manifest preference for the insect BgNaV1 channel. Structure-activity relationship analysis revealed key residues for NaV-subtype selectivity. Combined with low EC50 values (e.g., NaV1.1: 7.9 nM (α-6); NaV1.3: 9.4 nM (α-5); NaV1.4: 14.6 nM (α-4)) this underscores the potential utility of α-nemertides for rational optimization to improve selectivity.
Peptide toxins find use in medicine, biotechnology, and agriculture. They are exploited as pharmaceutical tools, particularly for the investigation of ion channels. Here, we report the synthesis and activity of a novel family of peptide toxins: the cystine-knotted α nemertides. Following the prototypic α-1 and -2 (1 and 2), six more nemertides were discovered by mining of available nemertean transcriptomes. Here, we describe their synthesis using solid phase peptide chemistry and their oxidative folding by using an improved protocol. Nemertides α-2 to α-7 (2-7) were produced to characterize their effect on voltage-gated sodium channels (Blatella germanica BgNaV1 and mammalian NaVs1.1-1.8). In addition, ion channel activities were matched to in vivo tests using an Artemia microwell assay. Although nemertides demonstrate high sequence similarity, they display variability in activity on the tested NaVs. The nemertides are all highly toxic to Artemia, with EC50 values in the sub-low micromolar range, and all manifest preference for the insect BgNaV1 channel. Structure-activity relationship analysis revealed key residues for NaV-subtype selectivity. Combined with low EC50 values (e.g., NaV1.1: 7.9 nM (α-6); NaV1.3: 9.4 nM (α-5); NaV1.4: 14.6 nM (α-4)) this underscores the potential utility of α-nemertides for rational optimization to improve selectivity.
Animal peptide
toxins associated
with defense and predation have long been exploited for medicinal,
agricultural, and biotechnological applications.[1,2] Most
of those peptides originate from a limited number of taxa, including
cone snails, scorpions, spiders, and snakes. However, many more animals
make use of such compounds, and it is clear that the study of toxins
from carefully selected neglected taxa yield new compounds with potent
and interesting effects.[3] In the current
work, we characterize the effects of a novel family of peptide toxins,
the α-nemertides, as modulators of voltage-gated sodium channels
(NaV) and on Artemia salina. These peptide
toxins were discovered from one such overlooked taxon: nemertean worms.The phylum Nemertea comprises approximately 1350 valid species
worldwide.[4] The majority of species are
found in marine environments, though some are freshwater dwelling
(22 species)[5] and a few are terrestrial.[6] Most of the known species are predators or both
predators and scavengers, and they use their eversible proboscis to
hunt for prey. Their secretion is known to contain both proteinaceous
and low molecular weight toxins (recently reviewed)[7] and include, for example, peptide neurotoxins.[8,9] Lately, transcriptomic and genomic studies have revealed additional
putative protein toxins in nemertean worms, including possibly hemolytic
ion channel modulators (Na+, K+, Ca2+) and serine protease inhibitors.[8,10,11]Recently, we described the discovery of the
prototypic member of
a family of peptide toxins, nemertide α-1 (1),
from the epidermal mucus of the nemertean worm Lineus longissimus.[8] We showed that this conspicuous marine
worm also expressed the homologous nemertide α-2 (2), together with a larger type of nemertides, called β-nemertides,
on the peptide level. By mining the nemertean transcriptomes available
at the time, seven full-length α-nemertides (α-1–7; 1–7) and one truncated (α-8) one
were identified. All these peptides are concentrated to the Lineidean
genera of nemerteans, Figure .
Figure 1
Nemertide structure, sources, and sequences. (A) Solution NMR structure
of nemertide α 1 (PDB id 6ENA). The three disulfide
bonds at the core of the molecule are numbered (in Roman numerals)
and marked in yellow. Numerals mark the loops. (B) Schematic phylogenetic
tree of α nemertide expressing species identified on the transcriptomic
level. The tree is redrawn from Ament-Velásques et al. 2016.[12] *: No α nemertide was found in L. viridis. (C) Top: consensus α nemertide sequence
with the variable positions marked as numbers. Roman numerals mark
cysteines, and the ICK disulfide connectivity (I–IV, II–V,
III–VI) is displayed with black bars. Loop number in numerals;
number of residues in parentheses. Bottom: Sequence alignment of nemertides,
including the truncated α-8. P*: hydroxyproline (Hyp). With
the exception of 1 and 2, the α nemertides
have so far been identified only in transcriptomic data from the marine
Lineideae family of nemertean worms (genus: Lineus: 4 sp., Ramphogordius: 1 sp., and a partial sequence
in Riseriellus: 1 sp.) The partial contig of 8 from
the R. occultus transcriptome was omitted from this
study since the full C-terminal sequence was unknown.
Nemertide structure, sources, and sequences. (A) Solution NMR structure
of nemertide α 1 (PDB id 6ENA). The three disulfide
bonds at the core of the molecule are numbered (in Roman numerals)
and marked in yellow. Numerals mark the loops. (B) Schematic phylogenetic
tree of α nemertide expressing species identified on the transcriptomic
level. The tree is redrawn from Ament-Velásques et al. 2016.[12] *: No α nemertide was found in L. viridis. (C) Top: consensus α nemertide sequence
with the variable positions marked as numbers. Roman numerals mark
cysteines, and the ICK disulfide connectivity (I–IV, II–V,
III–VI) is displayed with black bars. Loop number in numerals;
number of residues in parentheses. Bottom: Sequence alignment of nemertides,
including the truncated α-8. P*: hydroxyproline (Hyp). With
the exception of 1 and 2, the α nemertides
have so far been identified only in transcriptomic data from the marine
Lineideae family of nemertean worms (genus: Lineus: 4 sp., Ramphogordius: 1 sp., and a partial sequence
in Riseriellus: 1 sp.) The partial contig of 8 from
the R. occultus transcriptome was omitted from this
study since the full C-terminal sequence was unknown.Nemertide α-1 (1) contains three disulfide
bonds
and folds into the inhibitory cystine knot (ICK) motif. The structure
is compact, consisting of a series of turns and one stretch of secondary
structure: a short α-helix in loop 2, Figure A. Residues Phe8, Trp22, and Phe24 form an
aromatic patch on one side of the molecule.[8] Sequence similarity is high in the family; for example 2–6 differ by only one or two substitutions from 1, and three-dimensional structures can be assumed to be highly
similar, Figure .
But what differences do these variations confer in activity?The functional characterization of nemertean peptide and protein
toxins is limited so far. Cytolytic and hemolytic effects have been
reported for A-cytolysin[13] and parborlysin
proteins,[14,15] and the 55-residue-long and helical neurotoxin
B-IV[16] and nemertide α-1 (1) are paralytic and lethal to crustaceans in sub-nmol/kg doses when
injected.[8,16−18] Mechanism of action
has only been shown for α-1, which binds to NaV channels
with high affinity and selectivity,[8] although
sodium ion channels have also been suggested to be the target for
neurotoxin B-IV.[16] Nemertide α-1
(1) was found to be exceptionally toxic to green crabs
(Carcinus maenas, lethal at doses above ∼300
pmol/kg) and to cockroaches (Blaptica dubia, lethal
at 2 nmol/kg). Furthermore, the toxin was shown to modulate insect
NaVs at low nanomolar concentrations and mammalian NaVs in the μM range,[8] suggesting
a possible use for these peptides as bioinsecticides.[19] This observation is supported by a recent study where pro-alpha-1
was expressed and tested against a selection of insects, demonstrating
oral toxicity to aphids and brassica moths.[20]In the current work, we report the synthesis, oxidative folding,
and functional characterization of native members of the α-nemertide
family of peptide toxins. All peptides show activity on Artemia
salina, and their activity on voltage-gated sodium channels
of both invertebrate and vertebrate origin reveals selectivity as
well as structure–activity relationships.
Results and Discussion
Synthesis
and Folding of Nemertides
Only two of the
α-nemertide toxins (1, 2) have been
detected as peptides from natural sources, whereas the discovery of
the other five full-length peptides is the result of transcriptome
mining. Previously,[8] we showed that at
least 1 is amenable for peptide synthesis: here we demonstrate
that the full family can be made using FMOC-based solid phase peptide
synthesis (SPPS), with good yields and purity. All α-nemertides
were considered to contain Hyp residues in the C-terminus based on
the native 1 and 2.[8]In analogy with our previous work, 2 was assembled
on HMPA resin using automated SPPS on a CEM Liberty1 microwave-assisted
synthesizer.[8] Although this high-swelling
resin generally results in good yields, it comes with the practical
problem of sometimes blocking drain tubing of the reaction vessel,
resulting in stops in the sequence of reactions as well as high maintenance
load. Nemertides 3–6 were therefore
assembled on 2-chlorotrityl resin (Iris Biotech Marktredwitz, Germany),
and 7 was purchased from GenScript (Piscataway, NJ, USA)
in reduced form. Yields and purities were similar for 3 and 4 compared to the previous synthesis of 1,[8] with the target peptides as the major
product as judged by HPLC-UV. The synthesis of 5 and 6 gave a higher degree of impurities after cleavage.The protocol for oxidative folding was substantially improved from
previous work.[8] Notably, extra caution
was taken to completely dissolve peptides first in water, followed
by addition of DMSO prior to mixing into the folding buffer. No precipitation
and/or aggregation of peptides were observed using this procedure
for any peptide. We presume that the overall fold of peptides and
disulfide connectivity are the same within this peptide family and
that all peptides follow the same folding pattern as 1 and 2. The presumption that peptides 3–7 have the overall structure in common with 1 and 2 is further supported by their bioactivity
as described below. Then, all correctly folded nemertides 1–6 were distinguished from misfolded variants
by eluting as a distinct peak late in the chromatogram. Only 7 displayed a more complex folding pattern, where the main
product required further purification (using repetitive RP-HPLC).All folded nemertides were purified to >95% as judged by HPLC-UV
(215 nm), Figure S1. Typical HPLC-UV chromatograms
for crude peptide (cleaved), folding mixture after 15 h, and purified
folded peptide are shown in Figure . Identities of the purified peaks were analyzed using
UPLC-QToF. Expected monoisotopic masses were calculated and compared
to the experimental masses obtained from deconvolution of the 4z ions;
all experimental masses show errors of less than 10 ppm (Table ).
Figure 2
Analytical HPLC-UV traces
from synthesis, folding, and final purification
of nemertide α 4. To the left, schematic view of
the composition of peptide content. Top: Trace from cleavage of 4 from resin. Middle: Trace from oxidative folding after 15
h. Bottom: Pure folded 4. *Product wanted in each step.
Note that the chromatographic systems differ for the different chromatograms,
hence the drift in retention time for the folded 4. The
peaks at ∼24 (top) and 30 min (middle and bottom) are connected
to the gradient.
Table 1
Theoretical
and Experimental Molecular
Mass Values for α 2–7a
expected (Da)
experimental (Da)
delta
(Da)
2
3259.3415
3259.3607
0.0192
3
3274.3523
3274.3783
0.0260
4
3323.3363
3323.3683
0.0320
5
3316.3055
3316.3371
0.0316
6
3373.3631
3373.3635
0.0004
7b
3328.7969
3328.35
0.45
Theoretical and experimentally determined
deconvoluted (4z) masses for α 2–6. The 4z ion was chosen since it falls within the calibrated mass
range for the QToF used. All values for 2–6 are within 10 ppm of the expected masses.
For 7, only low-resolution
MS (LCQ deca) was available; the convoluted mass was calculated for
the doubly charged average mass ion.
Analytical HPLC-UV traces
from synthesis, folding, and final purification
of nemertide α 4. To the left, schematic view of
the composition of peptide content. Top: Trace from cleavage of 4 from resin. Middle: Trace from oxidative folding after 15
h. Bottom: Pure folded 4. *Product wanted in each step.
Note that the chromatographic systems differ for the different chromatograms,
hence the drift in retention time for the folded 4. The
peaks at ∼24 (top) and 30 min (middle and bottom) are connected
to the gradient.Theoretical and experimentally determined
deconvoluted (4z) masses for α 2–6. The 4z ion was chosen since it falls within the calibrated mass
range for the QToF used. All values for 2–6 are within 10 ppm of the expected masses.For 7, only low-resolution
MS (LCQ deca) was available; the convoluted mass was calculated for
the doubly charged average mass ion.
Small Sequence Differences Modulate Physicochemical Properties
of Nemertide α Peptides
Nemertides 2–6 were co-injected on the UPLC-QToF (using a C18 column) to
evaluate the hydrophilicity. Peptide 7 was not evaluated
in these experiments due to its limited availability. All five toxins
(2–6) eluted between 17 and 22 min
in the system used, in the elution order 3, 2, 6/4, and 5 (Figure ). The order of elution reflects changes
in the aromatic patch comprising residues in positions 8, 22, and
24; the early eluting 2 and 3 lack an aromatic
amino acid in position 8. Furthermore, peptide 3 contains
a basic residue Lys4, explaining the early elution at low pH. The
elution order of 4, 5, and 6 may also be explained by residues in position 4: 6 has
a Lys and elutes first of the three, shortly followed by 4 with a hydroxyl-containing Ser in that position. Nemertide α-5
elutes last, with an aliphatic Ala at position 4. The basic Lys/His25
does not seem to influence the retention order on the column.
Figure 3
Base peak intensity
chromatogram of a mixture of the nemertides 2–6. 3 elutes at 17.7 min, 2 elutes
at 19.3 min, and 6 and 4 elute at 20.9–21.0
min. 5 elutes at 21.5 min.
The time axis is truncated to show 17 through 23 min. Nemertide α-1 was not included in this experiment, but elutes after 2 in a similar system.[8]
Base peak intensity
chromatogram of a mixture of the nemertides 2–6. 3 elutes at 17.7 min, 2 elutes
at 19.3 min, and 6 and 4 elute at 20.9–21.0
min. 5 elutes at 21.5 min.
The time axis is truncated to show 17 through 23 min. Nemertide α-1 was not included in this experiment, but elutes after 2 in a similar system.[8]
Activity on Brine Shrimps Distinguishes Two Groups of α-Nemertides
The clear and rapid effect of toxins on green crabs (C.
maenas) was a key to their discovery; however the use of
these relatively large crustaceans is highly dependent on availability
and season. We therefore selected an alternative in vivo assay based on the brine shrimp, Artemia salina, as a substitute. Artemia are small in size, and
the assay can be performed in a microwell format using minimal amounts
of toxin.[21] The readout of the assay was
the lethality after 24 h, and larvae were not followed over time.
However, at the highest concentrations effects could be observed within
minutes, with larvae going into a convulsive state followed by death.All tested α-nemertides (1–7) exhibit high toxicity to Artemia, with EC50 values in the sub to low μM range. Furthermore, the
activity distinguishes the tested α-nemertides into two groups: 1, 4, and 5 display EC50 values in the sub μM range (0.3, 0.4, and 0.4 μM, respectively),
whereas 2, 3, 6, and 7 have EC50 values 1 order of magnitude higher
(2.9, 4.7, 2.8, and 6.1 μM, respectively). EC50 curves
are shown in Figure .
Figure 4
Effect of α-nemertides in the Artemia microwell
assay. 1, 4, and 5 have EC50 values in the range 0.3–0.4 μM. 2, 3, 6, and 7 have average
EC50 values in the range 2.8–6.1 μM. All experiments
were performed in duplicate, except 7, which was done
in triplicate. All data points are shown in the graphs (dots), with
average fitted values plotted as a line. Vertical dotted lines display
the EC50s.
Effect of α-nemertides in the Artemia microwell
assay. 1, 4, and 5 have EC50 values in the range 0.3–0.4 μM. 2, 3, 6, and 7 have average
EC50 values in the range 2.8–6.1 μM. All experiments
were performed in duplicate, except 7, which was done
in triplicate. All data points are shown in the graphs (dots), with
average fitted values plotted as a line. Vertical dotted lines display
the EC50s.
α-Nemertides Show
Potent and Differing Effects on NaV Channels
All
peptides (1–7) display potent activity
on NaV channels, and
current results demonstrate structure–activity relationships.
They all show the highest activity on insect BgNaV1: 1 and 4–7 display EC50 values in the low nM range (2.6–11.1 nM), whereas 2 and 3 are approximately one order of magnitude
less active. The most active of them all is 6. EC50 values of all peptides against all ion channels tested are
shown in Table . To
simplify comparison, EC50 values have been normalized to
the most active peptide in Supplementary Table 1 and their activity on BgNaV1.
Table 2
EC50 Values (nM) of 1–7 in NaV1.1–1.8 and
BgNav1a
BgNav1
Nav1.1
Nav1.2
Nav1.3
Nav1.4
Nav1.5
Nav1.6
Nav1.7
Nav1.8
α-1
8.6 ± 2.9
124.1 ± 28.7
359.6 ± 89.8
135.4 ± 76.3
145.5 ± 57.5
138.3 ± 25.5
240.4 ± 22.3
76.5 ± 33.9
n.a.
α-2
87.2 ± 10.5
125.8 ± 43.6
97.9 ± 23.2
127.7 ± 44.5
1150.3 ± 217.8
149.2 ± 89.1
1361.8 ± 115.2
1296.7 ± 232.4
n.a.
α-3
97.5 ± 15.6
125.8 ± 43.6
137.8 ± 36.5
138.9 ± 63.2
150.2 ± 72.7
108.4 ± 5.9
92.8 ± 11.2
102.2 ± 5.8
n.a.
α-4
11.1 ± 1.6
92.0 ± 38.8
134.2 ± 34.0
12.9 ± 3.2
14.6 ± 3.6
27.8 ± 4.3
123.6 ± 29.7
80.5 ± 28.3
n.a.
α-5
7.8 ± 3,2
102.1 ± 50.2
156.1 ± 10.5
9.4 ± 3.7
15.4 ± 5.4
132.7 ± 21.8
66.9 ± 8.2
73.0 ± 14.1
n.a.
α-6
2.6 ± 0.3
7.9 ± 1.3
24.3 ± 2.3
105.6 ± 54.9
46.4 ± 7.2
215.2 ± 63.6
36.3 ± 4.3
97.2 ± 8.3
n.a.
α-7
9.5 ± 1.2
171.5 ± 61.6
50.4 ± 16.1
170.2 ± 39.5
810.6 ± 130.4
155.6 ± 18.3
147.6 ± 53.6
129.0 ± 24.6
n.a.
All experiments were run in triplicate.
n.a.: not active.
All experiments were run in triplicate.n.a.: not active.Nemertide α-6 (6) also displays the most potent
activity of all peptides on mammalian ion channels, with an EC50 of 7.9 nM on Nav1.1. This is one order of magnitude higher
activity than the effect observed for any other toxin: 1–5 and 7 has EC50 values
in the range of 92–125.8 nM on Nav1.1. Nemertide α-6
(6) differs from the other α-nemertides by having
the combination of Lys at position 4 and Phe at position 8. It is
also the most potent peptide (EC50 24.3 nM) on Nav1.2.
Notably, the prototypic α-1 (1) is the least active
peptide on this particular ion channel (EC50 359.6 nM),
and this is also the highest EC50 value for 1 on all of the tested NaVs.On the NaV1.3 channel, 4 and 5 exhibit substantially
higher activity than other peptides. These
two peptides also show high potency against NaV1.4, but
notably the effect of 5 is one order of magnitude lower
than that of 4 to NaV1.5.The largest
differences between peptides on any ion channel are
seen for NaV1.4, ranging from the EC50 of 4 at 14.6 nM to 2 with an EC50 of
1150.3 nM. In contrast, the differences in activity are smallest on
NaV1.5. On NaV1.6, 2 exhibits an
EC50 (1361.8 nM) one order of magnitude higher than 1, 4, and 7 and 2 orders of magnitude
higher than 3, 5, and 6. Nemertide 6 is the most potent, with an EC50 of 36.3 nM.
On NaV1.7, 2 is the least active toxin by
far, with an EC50 value of 1296.7 nM. All other α-nemertides
(1, 3, 4, 6, 7) exhibit comparable EC50 values on NaV1.7.
Sequence, Structure, and Activity of Nemertean α Peptide
Toxins
In the present investigation, we verified that small
differences in the amino acid (AA) sequences may have a profound effect
on the peptide syntheses, folding, and biological activities. Comparing
AA sequences in detail shows that the α-nemertides discovered
so far vary at only seven out of 31 amino acids, positions 4, 5, 8,
11, 13, 25, and 28, as highlighted in Figure . Positions 4 (Ala, Lys, Ser, Pro), 5 (Thr,
Val), and 8 (Phe, Val, Gly, Met) are all situated in loop 1 between
Cys residues I and II. Loop 2, i.e., the sequence between Cys II and
III, has two variable positions: 11 (Leu, Ile) and 13 (Lys, Asn).
Loop 3 is fully conserved, whereas loop 4 contains the variable position
25 (Lys, His, and Ala of α-8). The N-terminal “loop”
contains only a conserved Gly residue, whereas the C-terminal stretch
contains five amino acids, one of which is the variable position 28
(Hyp, Lys). When comparing all peptides, 7 is the most
divergent of the toxins, harboring seven substitutions from the consensus
sequence. The pairwise alignment of 1–6 varies between 90.3% (2 vs 6) and 96.7%,
whereas α-7 has between 77% and 80% identity, vs 1–4 and 5/6.
The most frequent variable positions (4, 8, and 25) are all positioned
on the same side of the peptide, where loops 1 and 4 meet, Figure .
Figure 5
Nemertide α sequence
variation and species. Consensus sequence
alignment of variable positions. Alignment of the variable positions
(positions 4, 5, 8, 11, 13, 25, and 28) of α-nemertides. Species
where α-nemertides are found: L. la, L. lacteus; L. lo, L. longissimus; L. ru, L. ruber; L. sa, L. sanguiens; R. ps, R. pseudolacteus. 1 is found in three species,
and 2 and 3 are found in two species each. 4–7 are found in one species each. All
investigated species contain two α-nemertide sequences, except L. ruber, which harbors three. P*, hydroxyproline.
Figure 6
Ribbon and surface representations of 1 (RCSB
pdb
id: 6ENA) with
the variable positions between the family members marked. Red: Positions
with the highest frequency of variability: 4 (AKSP), 8 (FVGM), and
25 (KH). Blue: Positions that only differ from the archetype α
sequence in α-7; positions 5 (V), 11 (I), 13 (N), and 28 (K).
All red-colored positions (4, 8, 25) are situated on the same side
of the molecule. Figure prepared in UCSF Chimera.[22]
Nemertide α sequence
variation and species. Consensus sequence
alignment of variable positions. Alignment of the variable positions
(positions 4, 5, 8, 11, 13, 25, and 28) of α-nemertides. Species
where α-nemertides are found: L. la, L. lacteus; L. lo, L. longissimus; L. ru, L. ruber; L. sa, L. sanguiens; R. ps, R. pseudolacteus. 1 is found in three species,
and 2 and 3 are found in two species each. 4–7 are found in one species each. All
investigated species contain two α-nemertide sequences, except L. ruber, which harbors three. P*, hydroxyproline.Ribbon and surface representations of 1 (RCSB
pdb
id: 6ENA) with
the variable positions between the family members marked. Red: Positions
with the highest frequency of variability: 4 (AKSP), 8 (FVGM), and
25 (KH). Blue: Positions that only differ from the archetype α
sequence in α-7; positions 5 (V), 11 (I), 13 (N), and 28 (K).
All red-colored positions (4, 8, 25) are situated on the same side
of the molecule. Figure prepared in UCSF Chimera.[22]All α-nemertides tested
display potent effects in Artemia and in NaV assays. The combined results
indicate grouping of peptides: 1, 4, and 5 showed higher activity against both Artemia and BgNaV1, compared to 2 and 3. The Artemia assay clearly divides α-nemertides
into two groups: the highly active 1, 4,
and 5 (EC50 0.3–0.5 μM) and moderately
active toxins 2, 3, 6, and 7 (EC50 2.8–6.1 μM). The most active
(1, 4, 5) all contain a small
amino acid (Ala or Ser) in position 4 in combination with Phe8, whereas 3 and 6 with lower activity have a basic Lys
in position 4. Furthermore, 2 and 3 lack
an aromatic residue in position 8. Nemertide 6 shows
high activity in the BgNaV assay, but not in the Artemia microwell assay.α-Nemertides appear
to always be expressed at least in pairs
on the transcriptomic level. Evidence of coexpression on the peptide
level has so far only been demonstrated in L. longissimus, in which 1 and 2 were found to be present
together in the mucus.[8] Transcriptome analyses
indicate that 1 is present together with 2 in both L. longissimus and L. ruber. L. ruber also expresses 7. In L. lacteus, 1 is paired with 3. The results from the assays reveal that these “pairs”
are composed of toxins of different potency. For example, 1 is one order of magnitude more potent both in the Artemia assay and at the BgNaV channel as compared to 2 and 3. The same pattern can be observed in other pairs:
the highly potent 5 occurs together with the less potent 3 in R. pseudolacteus, and in the case of L. sanguineus, 4 is paired with 6. Both of these toxins are approximately equipotent at BgNaV1; 4 is however one order of magnitude more active in Artemia. Nemertide α-7 (7) found in the L. ruber transcriptome was the least active peptide in Artemia. It does however exhibit similar activity in BgNaV1 as compared to α-1 (1). The pairwise
expression of α-nemertides with differing activity profiles
suggests that these peptides may target different prey or predators.Most of the α-nemertides display higher activity on the cockroach
BgNaV1 channel than on the mammalian subtypes tested, which
becomes more evident when comparing potency ratios (see Table and the normalized values in Supplementary Table 1). This is especially pronounced
for 1, where the EC50 for BgNaV1 is at least nine times lower than in the other channels tested.
In contrast, 3 displays virtually no difference in EC50 between the different NaVs including BgNaV1. The results suggest a possibility to tailor sequences to
achieve a more specific selectivity profile, and some initial conclusions
may be drawn from the native sequence variations in combination with
the activity profiles. For example, 1 and 2 differ in position 8 only, containing Phe and Val, respectively,
which makes up part of the aromatic patch. The difference is clear
in the Artemia assay: 1 is approximately
10 times more active, demonstrating the importance of a hydrophobic/aromatic
residue. Also in the NaV screening, clear differences are
evident; the change from Phe to Val causes loss in activity by at
least 1 order of magnitude in the following NaV subtypes:
BgNaV1, NaV1.4, NaV1.6, and NaV1.7. A 3-fold increase in activity is observed for NaV1.2, while no difference is apparent for NaV1.1,
NaV1.3, and NaV1.5.At position 4, an
increase in activity is observed when Ala (as
in 1) is exchanged to Ser (as in 4) for
NaV1.3, NaV1.4, and NaV1.5, while
almost no differences are observed for the remaining subtypes. The
influence of a basic Lys in that position (as in 6) is
deducible in the comparison between 5 (Ala4, His25) and 6 (Lys4, His25). A Lys residue at position 4 results in a
loss in activity of 1 order of magnitude in the Artemia assay. In the NaV assays, it results in a strong increase
in activity at NaV1.1 and NaV1.2. Interestingly,
a loss in activity by 1 order of magnitude is observed for NaV1.3, while almost no change in activity is observed for the
remaining channels, including BgNaV1. Position 25 (consensus, 1, Lys) can be compared to 5 (His), with a pronounced
increase in activity for NaV1.3 and NaV1.4.
In NaV1.6 a 4-fold increase in activity is observed in
favor of His25, while almost no difference is observed for BgNaV1, NaV1.1, NaV1.2, NaV1.5,
and NaV1.7.
Use and Role of α-Nemertides
Do any of these
compounds appear to be possible hits for further studies of applications
in medicine or agriculture? Among the NaV channels, NaV1.7 has been in particular focus for pain control.[23,24] Neither of the nemertides tested here display especially remarkable
activity nor high selectivity against this channel subtype. NaV1.3 is also of interest for pain control; here 5 shows high activity (9.4 nM). Interestingly, this peptide is 10-fold
less active on NaV1.5, which may be important, as unwanted
effects on this ion channel are of special concern because NaV1.5 is predominantly expressed in heart muscle. Notable is
also the effect of 6, as NaV1.1 is a target
in epilepsy.[25] Nemertide 6 is also the most favorable peptide with reference to activity on
Nav1.5. However, the notorious Nav1.5 may now emerge as a potential
drug target. Recently, Nijak et al. showed that nemertide 1 was able to restore the loss of function by reducing channel inactivation
by binding to NaV1.5 in a rare inherited cardiac arrhythmia.[26] Nemertide 4, which normally would
be immediately disqualified as the most toxic peptide because it is
the most active on NaV1.5, might thus be the most interesting
one.Judged from activity in vivo, 1 still appears as one of the most promising insecticidal peptides,
but in the BgNaV1 assay 6 again stands out
as the most active compound. This leads to another question: why are
the effects of some peptides predictable between in vitro and in vivo, whereas others are not? Nemertide 6 contains a Lys at position 4, adding an extra positive charge
to the molecule. This could possibly indicate a bioavailability threshold.
Lys4 can also be found in 3, which has relatively low
activity both in Artemia and at the BgNaV1 channel. Nemertides 2 and 3, with low
activity in both Artemia and BgNaV1, both
lack a Phe in position 8, indicating an important position for insect/crustacean
activity. Together, the combined results from 2, 3, and 6 indicate that a Lys in position 4 mainly
affects the bioavailability in Artemia, while a Phe
at position 8 is important for the actual effect at the channel.The role of these peptides in nature is still unclear. Most ion
channel toxins are described as parts of venoms,[27] but the roles of nemertean toxins can be dual. All five
species for which full-sequence α-nemertides have been identified
also express both cytolysins/parborlysins and neurotoxin B/β-homologues
on the transcriptomic level.[7,8] All three toxin types
have been identified in the secreted mucus and may be part of the
same defense/predatory system, where the cytolysins/parborlysins may
facilitate uptake of the neurotoxins into the intended prey/aggressor
or be part of the protection against malevolent microorganisms.
Experimental Section
Synthesis of α-Nemertides 1–7
Nemertides α-1–6
were assembled in
0.1 mM scale using Fmoc-chemistry-based automated SPPS essentially
according to our previously described method for the synthesis and
cleavage of α-1,[8] with the following
differences: for 3–6, 2-chlorotrityl
resin was utilized instead of the high-swelling HMPA resin previously
used. Nemertides α-3–6 were assembled on 2-chlorotrityl
in 0.1 mmol scale, with the first four amino acids (positions 31–28)
coupled manually. The first amino acid (Gln) was loaded at 0.7 equiv
using DIPEA as coupling reagent, and the unoccupied binding sites
were capped using MeOH. The following Asn residue (5 equiv) was double-coupled
with DIC (10 equiv) and OxymaPure (10 equiv). All hydroxyprolines
were double-coupled using 3 equiv of amino acid. The resin was then
transferred to a microwave peptide synthesizer (Liberty 1, CEM Corp.,
Matthews, NC, USA) for the remaining coupling cycles except a manually
introduced dipeptide at positions 11 and 12 (Leu-Ser; using 2 equiv).
Peptides were cleaved off the resin by the addition of TFA/H2O/TIPS (95:2.5:2.5), precipitated in ice-cold ether, redissolved
in MeCN/H2O (1:1), lyophilized, and purified using RP-HPLC.
Nemertide α-7 was purchased from GenScript in reduced
form.All peptides were oxidatively folded in batches of 20–25
mg: peptides were dissolved in a total of 6 mL MQ-water added in small
portions with rigorous vortexing in between. DMSO (2 mL) was added
to the fully dissolved peptide, and the solution was slowly added
to 92 mL of 0.54 M NH4HCO3 containing 20% DMSO,
0.5 mM GSH, and 2.6 mM GSSG, yielding a final folding buffer of 100
mL of 0.5 M NH4HCO3, 20% DMSO, 0.45 mM GSH,
and 2.4 mM GSSG. The folding mixture was put on a shaking table for
15–18 h. Folding was quenched by addition of 200 mL of 0.4%
TFA in MQ-water.Purification of the folded peptides was performed
on RP-HPLC in
accordance with our previous work,[8] using
preparative RP-HPLC on a Jupiter C18 column (300 Å 250 ×
21.2 mm 10, Phenomenex, CA, USA) run in linear gradient mode (5–95%
MeCN, 0.05% TFA in 45 min, 16 mL/min). Fractions (0.8 min) were collected,
and a small sample of each fraction was analyzed by direct infusion
into an LCQ-Deca MS (Thermo Electron, CA, USA) to identify toxin-containing
fractions. The purity of selected fractions was assessed by HPLC-UV
using a Kinetex XB-C18 column (C18, 250 × 4.6 mm, 5 μ,
100 Å, Phenomenex) (6, 7) or a Jupiter
column (C18, 250 × 4.6 mm, 5 μ, 300 Å, Phenomenex)
(1–5). High-resolution MS was measured
using UPLC-QToF (Waters nanoAcquity; Micromass QToF Micro; Waters,
MA, USA). Quantification of the lyophilized pure, folded peptides
was performed using IR spectroscopy (DirectDetect, Millipore Corp.,
MA, USA).
Microwell Artemia Bioassay
The Artemia microwell assay was previously described.[21] In short, Artemia cysts (Artemio
pur, JBL, Neuhofen, Germany) were hatched in a separation funnel containing
artificial seawater (33 g salt/L, Coral pro salt, Red Sea, Eilat,
Israel) prepared in deionized water. A small aquarium air pump was
used to aerate the water until the shrimp were harvested (24 h, RT).Aliquots of 100 μL (0.003–300 μM nemertide in
MQ-water, control: 100 μL of MQ-water) were added in duplicates
to flat-bottom 96-well plates (cat. no.: nunc 260895, Thermo Fisher
Scientific, Waltham, MA, USA). Artemia nauplii, 10–15
in 100 μL of salt water, were transferred to the wells and incubated
at RT in the dark for 24 h. Wells were then examined under a microscope,
and all dead and immobilized nauplii were counted. The surviving nauplii
were sacrificed by addition of 100 μL of MeOH, followed by 15
min of incubation. The total numbers of nauplii were subsequently
counted. Toxicity was calculated as % dead or immobilized/total nauplii
in each well. Results were plotted in GraphPad prism 8. EC50 values were calculated using nonlinear regression.
Electrophysiology
on Selected NaVs
For the
expression of NaV channels (hNav1.1, rNaV1.2,
rNaV1.3, rNaV1.4, hNaV1.5, mNaV1.6, hNav1.7, rNaV1.8, the insect channel BgNaV1, the auxiliary subunits rβ1, hβ1, and TipE)
in Xenopus laevis oocytes, the linearized plasmids
were transcribed using the T7 or SP6 mMESSAGE-mMACHINE transcription
kit (Ambion, Carlsbad, CA, USA). The harvesting of stage V and VI
oocytes from an anaesthetized female X. laevis frog
was described previously.[28] Oocytes were
injected with 50 nL of cRNA at a concentration of 1 ng/nL using a
microinjector (Drummond Scientific, Broomall, PA, USA). The oocytes
were incubated in a solution containing 96 mM NaCl, 2 mM KCl, 1.8
mM CaCl2, 2 mM MgCl2, and 5 mM HEPES (pH 7.4),
supplemented with 50 mg/L gentamycin sulfate.Two-electrode
voltage-clamp recordings were performed at room temperature (18–22
°C) using a Geneclamp 500 amplifier (Molecular Devices, Downingtown,
PA, USA) controlled by a pClamp data acquisition system (Axon Instruments,
Union City, CA, USA). Whole cell currents from oocytes were recorded
1–4 days after injection. The bath solution composition was
96 mM NaCl, 2 mM KCl, 1.8 mM CaCl2, 2 mM MgCl2, and 5 mM HEPES (pH 7.4), 5 (pH 7.4). Voltage and current electrodes
were filled with 3 M KCl. Resistances of both electrodes were kept
between 0.8 and 1.5 MΩ. The elicited currents were filtered
at 1 kHz and sampled at 20 kHz using a four-pole low-pass Bessel filter.
Leak subtraction was performed using a −P/4 protocol. For the
electrophysiological analysis of toxins, a number of protocols were
applied from a holding potential of −90 mV with a start-to-start
interval of 0.2 Hz. Sodium current traces were evoked by 100 ms depolarizations
to Vmax (the voltage corresponding to
maximum sodium current in control conditions). To assess the concentration–response
relationships, data were fitted with the Hill equation: y = 100/[1 + (EC50/[toxin])], where y is the amplitude of the toxin-induced
effect, EC50 is the toxin concentration at half-maximal
efficacy, [toxin] is the toxin concentration, and h is the Hill coefficient. All data were tested for normality using
a D’Agustino Pearson omnibus normality test and for variance
using Bonferroni’s test or Dunn’s test. Data following
a Gaussian distribution were analyzed for significance using one-way
ANOVA. Nonparametric data were analyzed for significance using the
Kruskal–Wallis test. Differences were considered significant
if the probability that their difference stemmed from chance was below
5% (p < 0.05). All data were analyzed using pClamp
Clampfit 10.0 (Molecular Devices) and Origin 7.5 software (Originlab,
Northampton, MA, USA).The use of the frogs was in accordance
with license number LA1210239
of the Laboratory of Toxicology & Pharmacology, University of
Leuven. All animal care and experimental procedures were in accordance
with the guidelines of “European convention for the protection
of vertebrate animals used for experimental and other scientific purposes”
(Strasbourg, 18.III.1986).
Authors: Matej Butala; Daniel Šega; Blaž Tomc; Zdravko Podlesek; William R Kem; Frithjof C Küpper; Tom Turk Journal: Toxicon Date: 2015-10-03 Impact factor: 3.033
Authors: S L Ament-Velásquez; E Figuet; M Ballenghien; E E Zattara; J L Norenburg; F A Fernández-Álvarez; J Bierne; N Bierne; N Galtier Journal: Mol Ecol Date: 2016-07 Impact factor: 6.185