| Literature DB >> 34430572 |
Haipeng Pang1, Xiaoxiao Sun1, Shuoming Luo1, Jian Lin1, Xiajie Shi1, Yang Xiao1, Gan Huang1, Xia Li1, Zhiguo Xie1, Zhiguang Zhou1.
Abstract
BACKGROUND: This study sought to examine the correlation between 2 single-nucleotide polymorphisms (SNPs; rs10403848 and rs2043211) in the caspase recruitment domain-containing protein 8 (CARD8) gene and the risks and clinical features of patients with type 1 diabetes mellitus (T1DM) in the Han Chinese population.Entities:
Keywords: Type 1 diabetes mellitus (T1DM); caspase recruitment domain-containing protein 8 (CARD8); single-nucleotide polymorphism (SNP)
Year: 2021 PMID: 34430572 PMCID: PMC8350628 DOI: 10.21037/atm-21-1126
Source DB: PubMed Journal: Ann Transl Med ISSN: 2305-5839
Primer sequences for rs10403848 and rs2043211
| SNP | Primer sequence (5'-3') |
|---|---|
| rs10403848 | |
| Forward | ACGTTGGATGGACAGTGGCAGTGATATACC |
| Reverse | ACGTTGGATGGGGAAATGCTCTTGAAGCCT |
| Extension | cTCTGGAGCAACAATATGAAT |
| rs2043211 | |
| Forward | ACGTTGGATGGAAGATGATGAGACAGAGGC |
| Reverse | ACGTTGGATGCCCAGATAGTTGACACTCAG |
| Extension | AGAGGCAGAGCCATTATTG |
SNP, single-nucleotide polymorphism.
Clinical characteristics of case and control participants
| Characteristic | T1DM (n=510) | Controls (n=531) | P value |
|---|---|---|---|
| Sex (male/female) | 275/235 | 273/258 | 0.418 |
| Age (year) | 22 (13 to 34) | 42 (32 to 51) | <0.001* |
| BMI (kg/m2) | 18.70 (16.49–20.70) | 22.60 (20.40–24.70) | <0.001* |
| Duration (months) | 5.00 (0.50–21.50) | – | – |
| FPG (mmol/L) | 8.91 (6.11–14.40) | 4.87 (4.45–5.30) | <0.001* |
| PPG (mmol/L) | 14.90 (9.90–20.70) | 5.60 (4.70–6.40) | <0.001* |
| FCP (pmol/L) | 77.50 (17.79–164.10) | – | – |
| PCP (pmol/L) | 142.21 (39.60–279.20) | – | – |
| HbA1c (%) | 10.00 (7.80–12.80) | – | – |
Values in the backets represent mean ± standard deviations if the data followed a normal distribution, or interquartile ranges otherwise. *P<0.05 was considered significant. BMI, body mass index; FPG, fasting plasma glucose; PPG, postprandial plasma glucose; FCP, fasting C-peptide; PCP, postprandial C-peptide; HbA1c, glycated hemoglobin.
HWE of CARD8 gene polymorphisms
| SNP | Group | Genotype | Observed value | Expected value | P value |
|---|---|---|---|---|---|
| rs10403848 | Case | AA | 49 | 51.14 | 0.661 |
| AG | 225 | 220.72 | |||
| GG | 236 | 238.14 | |||
| Control | AA | 46 | 55.71 | 0.054 | |
| AG | 252 | 232.57 | |||
| GG | 233 | 242.71 | |||
| rs2043211 | Case | AA | 115 | 115.31 | 0.957 |
| AT | 255 | 254.39 | |||
| TT | 140 | 140.31 | |||
| Control | AA | 127 | 125.36 | 0.775 | |
| AT | 262 | 265.29 | |||
| TT | 142 | 140.36 |
HWE, Hardy-Weinberg equilibrium; SNP, single-nucleotide polymorphism.
Genotype and allele frequencies of rs10403848 and rs2043211 between the case and control groups
| SNP | Cases (n=510), n (%) | Controls (n=531), n (%) | OR (95% CI) | P value |
|---|---|---|---|---|
| rs10403848 | ||||
| Genotype | ||||
| AA | 49 (9.6) | 46 (8.7) | 1.052 (0.676–1.635) | 0.823 |
| AG | 225 (44.1) | 252 (47.5) | 0.882 (0.683–1.138) | 0.332 |
| GG | 236 (46.3) | 233 (43.9) | 1 (reference) | |
| Allele | ||||
| A | 323 (31.7) | 344 (32.4) | 0.967 (0.805–1.163) | 0.723 |
| G | 697 (68.3) | 718 (67.6) | ||
| rs2043217 | ||||
| Genotype | ||||
| AA | 115 (22.5) | 127 (23.9) | 0.918 (0.651–1.295) | 0.628 |
| AT | 255 (50.0) | 262 (49.3) | 0.987 (0.739–1.320) | 0.99 |
| TT | 140 (27.5) | 142 (26.7) | 1 (reference) | |
| Allele | ||||
| A | 485 (47.5) | 516 (48.6) | 0.959 (0.808–1.139) | 0.635 |
| T | 535 (52.5) | 546 (51.4) |
SNP, single-nucleotide polymorphism; OR, odds ratio; CI, confidence interval.
Genotypes and frequency distributions of rs10403848 and rs2043211 between the case and control groups under different genetic models
| SNP | Genetic model | Genotype | Case, n (%) | Control, n (%) | OR (95% CI) | P value |
|---|---|---|---|---|---|---|
| rs10403848 | Dominant model | AA + AG | 274 (53.7) | 298 (56.1) | 0.908 (0.711–1.159) | 0.438 |
| GG | 236 (46.3) | 233 (43.9) | 1 (reference) | |||
| Recessive model | AA | 49 (9.6) | 46 (8.7) | 1.121 (0.735–1.709) | 0.597 | |
| AG + GG | 461 (90.4) | 485 (91.3) | 1 (reference) | |||
| Additive model | AA | 49 (9.6) | 46 (8.7) | 0.965 (0.799–1.167) | 0.716 | |
| AG | 225 (44.1) | 252 (47.5) | – | |||
| GG | 236 (46.3) | 233 (43.9) | – | |||
| Over-dominant model | AG | 225 (44.1) | 252 (47.5) | 0.874 (0.685–1.116) | 0.280 | |
| AA + GG | 285 (55.9) | 279 (52.5) | 1 (reference) | |||
| rs2043211 | Dominant model | AA + AT | 370 (72.5) | 389 (73.3) | 0.965 (0.734–1.268) | 0.797 |
| TT | 140 (27.5) | 142 (26.7) | 1 (reference) | |||
| Recessive model | AA | 115 (22.5) | 127 (23.9) | 0.926 (0.694–1.235) | 0.601 | |
| AT + TT | 395 (77.5) | 404 (76.1) | 1 (reference) | |||
| Additive model | AA | 115 (22.5) | 127 (23.9) | 0.959 (0.808–1.139) | 0.636 | |
| AT | 255 (50.0) | 262 (49.3) | – | |||
| TT | 140 (27.5) | 142 (26.7) | – | |||
| Over-dominant model | AT | 255 (50.0) | 262 (49.3) | 1.027 (0.805–1.309) | 0.832 | |
| AA + TT | 255 (50.0) | 269 (50.7) | 1 (reference) |
SNP, single-nucleotide polymorphism; OR, odds ratio; CI, confidence interval.
Minor alleles and frequency distributions of rs10403848 and rs2043211 between the case and control groups under different genetic models
| SNP | Minor allele | Dominant model | Recessive model | Additive model | Over-dominant model | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OR (95% CI) | P value | OR (95% CI) | P value | OR (95% CI) | P value | OR (95% CI) | P value | |||||
| rs10403848 | A | 0.908 (0.711–1.159) | 0.438 | 1.121 (0.735–1.709) | 0.597 | 0.965 (0.799–1.167) | 0.716 | 0.874 (0.685–1.116) | 0.280 | |||
| rs2043211 | A | 0.965 (0.734–1.268) | 0.797 | 0.926 (0.694–1.235) | 0.601 | 0.959 (0.808–1.139) | 0.636 | 1.027 (0.805–1.309) | 0.832 | |||
SNP, single-nucleotide polymorphism; OR, odds ratio; CI, confidence interval.
Clinical features of patients with classical T1DM and different genotypes of CARD8 gene rs10403848
| Clinical characteristic | Genotype | P value | ||
|---|---|---|---|---|
| AA | AG | GG | ||
| Sample size | 49 | 225 | 236 | – |
| Sex (male/female) | 23/26 | 124/101 | 128/108 | 0.577 |
| Onset age (year) | 20 (13.0–33.0) | 19 (11.0–33.0) | 20 (11.0–33.0) | 0.950 |
| Duration (months) | 4.00 (0.59–33.00) | 4.00 (0.37–17.50) | 5.00 (0.59–24.00) | 0.736 |
| BMI (kg/m2) | 19.45 (17.10–21.33) | 18.64 (16.53–20.80) | 18.63 (16.40–20.31) | 0.221 |
| FCP (pmol/L) | 90.00 (12.40–190.00) | 74.25 (19.85–162.93) | 75.79 (14.84–159.99) | 0.803 |
| PCP (pmol/L) | 141.80 (33.08–254.58) | 138.64 (53.15–288.34) | 139.50 (29.88–264.18) | 0.556 |
| HbA1c (%) | 9.30 (8.15–11.65) | 10.20 (7.40–12.80) | 10.00 (8.00–12.50) | 0.856 |
| GADA positivity (%) | 85.70 | 89.80 | 87.70 | 0.642 |
| GADA titer (U/mL) | 274.54 (64.74–561.04) | 320.37 (96.81–756.52) | 291.44 (83.71–808.73) | 0.443 |
| IA-2A positivity (%) | 53.30 | 46.90 | 45.50 | 0.636 |
| IA-2A titer (U/mL) | 422.34 (86.23–870.79) | 194.29 (42.80–634.82) | 176.44 (59.42–647.33) | 0.136 |
| ZnT8A positivity (%) | 27.90 | 31.70 | 30.70 | 0.886 |
| TG (mmol/L) | 1.02 (0.62–1.49) | 0.90 (0.67–1.24) | 0.96 (0.71–1.65) | 0.361 |
| TC (mmol/L) | 4.30 (3.72–4.73) | 4.06 (3.60–4.79) | 4.37 (3.66–5.04) | 0.160 |
| HDL (mmol/L) | 1.41 (1.11–1.62) | 1.23 (1.06–1.65) | 1.26 (1.01–1.57) | 0.733 |
| LDL (mmol/L) | 2.24 (1.86–2.91) | 2.32 (1.76–2.79) | 2.35 (1.75–2.99) | 0.863 |
Values in the backets represent mean ± standard deviations if the data followed a normal distribution, or interquartile ranges otherwise. *P<0.05 was considered significant. BMI, body mass index; FCP, fasting C-peptide; PCP, postprandial C-peptide; HbA1c, glycated hemoglobin; GADA, glutamic acid decarboxylase antibody; IA-2A, protein tyrosine phosphatase antibody; ZnT8A, zinc transporter 8 antibody; TG, triglycerides; TC, total cholesterol; HDL, high density lipoprotein; LDL, low density lipoprotein.
Clinical features of patients with classical T1DM and different CARD8 gene rs2043211 genotypes
| Clinical characteristic | Genotype | P value | ||
|---|---|---|---|---|
| AA | AT | TT | ||
| Sample size | 115 | 255 | 140 | – |
| Sex (male/female) | 60/55 | 144/111 | 71/69 | 0.500 |
| Onset age (year) | 17 (11.0–32.0) | 19 (11.0–32.0) | 20 (11.0–33.0) | 0.849 |
| Duration (months) | 5.00 (0.50–24.00) | 5.00 (0.40–23.00) | 3.50 (0.52–13.50) | 0.968 |
| BMI (kg/m2) | 18.53 (16.50–20.35) | 18.60 (16.40–20.69) | 19.17 (16.41–20.99) | 0.482 |
| FCP (pmol/L) | 72.94 (13.45–159.64) | 79.00 (18.40–148.14) | 68.40 (18.72–182.08) | 0.834 |
| PCP (pmol/L) | 144.52 (27.51–270.64) | 127.00 (37.08–247.58) | 160.29 (49.38–346.61) | 0.274 |
| HbA1c (%) | 9.80 (8.00–12.40) | 10.10 (7.90–12.90) | 10.10 (7.40–12.18) | 0.498 |
| GADA positivity (%) | 83.50 | 87.40 | 94.30 | 0.021* |
| GADA titer (U/mL) | 291.44 (77.80–797.57) | 364.24 (95.34–795.32) | 245.96 (78.28–649.27) | 0.219 |
| IA-2A positivity (%) | 45.80 | 49.80 | 42.30 | 0.386 |
| IA-2A titer (U/mL) | 132.19 (41.56–527.20) | 206.48 (47.57–640.06) | 213.97 (68.34–773.46) | 0.406 |
| ZnT8A positivity (%) | 27.40 | 31.90 | 31.90 | 0.704 |
| TG (mmol/L) | 1.08 (0.74–1.75) | 0.88 (0.66–1.30) | 0.98 (0.68–1.38) | 0.098 |
| TC (mmol/L) | 4.24 (3.58–4.91) | 4.29 (3.64–4.97) | 4.32 (3.73–4.78) | 0.918 |
| HDL (mmol/L) | 1.19 (1.02–1.47) | 1.34 (1.06–1.70) | 1.27 (1.06–1.64) | 0.098 |
| LDL (mmol/L) | 2.42 (1.69–3.06) | 2.37 (1.76–2.99) | 2.16 (1.79–2.77) | 0.489 |
Values in the backets represent mean ± standard deviations if the data followed a normal distribution, or interquartile ranges otherwise. *P<0.05 was considered significant. BMI, body mass index; FCP, fasting C-peptide; PCP, postprandial C-peptide; HbA1c, glycated hemoglobin; GADA, glutamic acid decarboxylase antibody; IA-2A, protein tyrosine phosphatase antibody; ZnT8A, zinc transporter 8 antibody; TG, triglycerides; TC, total cholesterol; HDL, high density lipoprotein; LDL, low density lipoprotein.