Literature DB >> 34427889

Random mutagenesis in vegetatively propagated crops: opportunities, challenges and genome editing prospects.

Mahpara Kashtwari1, Sheikh Mansoor2, Aijaz A Wani3, Mushtaq Ahmad Najar1, Rupesh K Deshmukh4, Faheem Shehzad Baloch5, Ishfaq Abidi6, Sajad Majeed Zargar7.   

Abstract

In order to meet the growing human food and nutrition demand a perpetual process of crop improvement is idealized. It has seen changing trends and varying concepts throughout human history; from simple selection to complex gene-editing. Among these techniques, random mutagenesis has been shown to be a promising technology to achieve desirable genetic gain with less time and minimal efforts. Over the decade, several hundred varieties have been released through random mutagenesis, but the production is falling behind the demand. Several food crops like banana, potato, cassava, sweet potato, apple, citrus, and others are vegetatively propagated. Since such crops are not propagated through seed, genetic improvement through classical breeding is impractical for them. Besides, in the case of polyploids, accomplishment of allelic homozygosity requires a considerable land area, extensive fieldwork with huge manpower, and hefty funding for an extended period of time. Apart from induction, mapping of induced genes to facilitate the knowledge of biological processes has been performed only in a few selected facultative vegetative crops like banana and cassava which can form a segregating population. During the last few decades, there has been a shift in the techniques used for crop improvement. With the introduction of the robust technologies like meganucleases, zinc finger nucleases (ZFNs), transcription activator-like effector nucleases (TALENs), and clustered regularly interspaced short palindromic repeats (CRISPR) more and more crops are being subjected to gene editing. However, more work needs to be done in case of vegetatively propagated crops.
© 2021. The Author(s), under exclusive licence to Springer Nature B.V.

Entities:  

Keywords:  CRISPR; Gamma rays; Gene editing; Mutagenesis; Saffron; Sterile crops

Mesh:

Year:  2021        PMID: 34427889     DOI: 10.1007/s11033-021-06650-0

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.742


  40 in total

1.  MUTATIONS IN BARLEY INDUCED BY X-RAYS AND RADIUM.

Authors:  L J Stadler
Journal:  Science       Date:  1928-08-24       Impact factor: 47.728

2.  Rapid identification of causal mutations in tomato EMS populations via mapping-by-sequencing.

Authors:  Virginie Garcia; Cécile Bres; Daniel Just; Lucie Fernandez; Fabienne Wong Jun Tai; Jean-Philippe Mauxion; Marie-Christine Le Paslier; Aurélie Bérard; Dominique Brunel; Koh Aoki; Saleh Alseekh; Alisdair R Fernie; Paul D Fraser; Christophe Rothan
Journal:  Nat Protoc       Date:  2016-11-03       Impact factor: 13.491

3.  Biological effects of ion beam irradiation on perennial gentian and apple.

Authors:  Nobuhiro Sasaki; Aiko Watanabe; Tomonori Asakawa; Makoto Sasaki; Nobue Hoshi; Zenbi Naito; Yoshiya Furusawa; Takashi Shimokawa; Masahiro Nishihara
Journal:  Plant Biotechnol (Tokyo)       Date:  2018-09-25       Impact factor: 1.133

4.  A SIMPLE Pipeline for Mapping Point Mutations.

Authors:  Guy Wachsman; Jennifer L Modliszewski; Manuel Valdes; Philip N Benfey
Journal:  Plant Physiol       Date:  2017-05-25       Impact factor: 8.340

5.  The pineapple genome and the evolution of CAM photosynthesis.

Authors:  Ray Ming; Robert VanBuren; Ching Man Wai; Haibao Tang; Michael C Schatz; John E Bowers; Eric Lyons; Ming-Li Wang; Jung Chen; Eric Biggers; Jisen Zhang; Lixian Huang; Lingmao Zhang; Wenjing Miao; Jian Zhang; Zhangyao Ye; Chenyong Miao; Zhicong Lin; Hao Wang; Hongye Zhou; Won C Yim; Henry D Priest; Chunfang Zheng; Margaret Woodhouse; Patrick P Edger; Romain Guyot; Hao-Bo Guo; Hong Guo; Guangyong Zheng; Ratnesh Singh; Anupma Sharma; Xiangjia Min; Yun Zheng; Hayan Lee; James Gurtowski; Fritz J Sedlazeck; Alex Harkess; Michael R McKain; Zhenyang Liao; Jingping Fang; Juan Liu; Xiaodan Zhang; Qing Zhang; Weichang Hu; Yuan Qin; Kai Wang; Li-Yu Chen; Neil Shirley; Yann-Rong Lin; Li-Yu Liu; Alvaro G Hernandez; Chris L Wright; Vincent Bulone; Gerald A Tuskan; Katy Heath; Francis Zee; Paul H Moore; Ramanjulu Sunkar; James H Leebens-Mack; Todd Mockler; Jeffrey L Bennetzen; Michael Freeling; David Sankoff; Andrew H Paterson; Xinguang Zhu; Xiaohan Yang; J Andrew C Smith; John C Cushman; Robert E Paull; Qingyi Yu
Journal:  Nat Genet       Date:  2015-11-02       Impact factor: 38.330

6.  Fine mapping identifies CsGCN5 encoding a histone acetyltransferase as putative candidate gene for tendril-less1 mutation (td-1) in cucumber.

Authors:  Feifan Chen; Bingbing Fu; Yupeng Pan; Chaowen Zhang; Haifan Wen; Yiqun Weng; Peng Chen; Yuhong Li
Journal:  Theor Appl Genet       Date:  2017-05-02       Impact factor: 5.699

7.  MMAPPR: mutation mapping analysis pipeline for pooled RNA-seq.

Authors:  Jonathon T Hill; Bradley L Demarest; Brent W Bisgrove; Bushra Gorsi; Yi-Chu Su; H Joseph Yost
Journal:  Genome Res       Date:  2013-01-08       Impact factor: 9.043

8.  A saturated SSR/DArT linkage map of Musa acuminata addressing genome rearrangements among bananas.

Authors:  Isabelle Hippolyte; Frederic Bakry; Marc Seguin; Laetitia Gardes; Ronan Rivallan; Ange-Marie Risterucci; Christophe Jenny; Xavier Perrier; Françoise Carreel; Xavier Argout; Pietro Piffanelli; Imtiaz A Khan; Robert N G Miller; Georgios J Pappas; Didier Mbéguié-A-Mbéguié; Takashi Matsumoto; Veronique De Bernardinis; Eric Huttner; Andrzej Kilian; Franc-Christophe Baurens; Angélique D'Hont; François Cote; Brigitte Courtois; Jean-Christophe Glaszmann
Journal:  BMC Plant Biol       Date:  2010-04-13       Impact factor: 4.215

9.  Mapping causal mutations by exome sequencing in a wheat TILLING population: a tall mutant case study.

Authors:  Youngjun Mo; Tyson Howell; Hans Vasquez-Gross; Luis Alejandro de Haro; Jorge Dubcovsky; Stephen Pearce
Journal:  Mol Genet Genomics       Date:  2017-11-29       Impact factor: 3.291

10.  artMAP: A user-friendly tool for mapping ethyl methanesulfonate-induced mutations in Arabidopsis.

Authors:  Peter Javorka; Vivek K Raxwal; Jan Najvarek; Karel Riha
Journal:  Plant Direct       Date:  2019-06-11
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  2 in total

1.  A Temporary Immersion System Improves Regeneration of In Vitro Irradiated Recalcitrant Indica Rice (Oryza sativa L.) Embryogenic Calli.

Authors:  Alejandro Hernández-Soto; Jason Pérez; Rebeca Fait-Zúñiga; Randall Rojas-Vásquez; Andrés Gatica-Arias; Walter Vargas-Segura; Ana Abdelnour-Esquivel
Journal:  Plants (Basel)       Date:  2022-01-29

Review 2.  Genome Editing for Sustainable Crop Improvement and Mitigation of Biotic and Abiotic Stresses.

Authors:  Mohd Fadhli Hamdan; Chou Khai Soong Karlson; Ee Yang Teoh; Su-Ee Lau; Boon Chin Tan
Journal:  Plants (Basel)       Date:  2022-10-06
  2 in total

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