Literature DB >> 34427654

Resolving the Rules of Robustness and Resilience in Biology Across Scales.

Erica Crespi1, Robert Burnap2, Jing Chen3, Moumita Das4, Natalie Gassman5, Epaminondas Rosa6, Rebecca Simmons7, Haruka Wada8, Zhen Q Wang9, Jie Xiao10, Bing Yang11, John Yin12, Jared V Goldstone13.   

Abstract

Why do some biological systems and communities persist while others fail? Robustness, a system's stability, and resilience, the ability to return to a stable state, are key concepts that span multiple disciplines within and outside the biological sciences. Discovering and applying common rules that govern the robustness and resilience of biological systems is a critical step toward creating solutions for species survival in the face of climate change, as well as the for the ever-increasing need for food, health, and energy for human populations. We propose that network theory provides a framework for universal scalable mathematical models to describe robustness and resilience and the relationship between them, and hypothesize that resilience at lower organization levels contribute to robust systems. Insightful models of biological systems can be generated by quantifying the mechanisms of redundancy, diversity, and connectivity of networks, from biochemical processes to ecosystems. These models provide pathways towards understanding how evolvability can both contribute to and result from robustness and resilience under dynamic conditions. We now have an abundance of data from model and non-model systems and the technological and computational advances for studying complex systems. Several conceptual and policy advances will allow the research community to elucidate the rules of robustness and resilience. Conceptually, a common language and data structure that can be applied across levels of biological organization needs to be developed. Policy advances such as cross-disciplinary funding mechanisms, access to affordable computational capacity, and the integration of network theory and computer science within the standard biological science curriculum will provide the needed research environments. This new understanding of biological systems will allow us to derive ever more useful forecasts of biological behaviors and revolutionize the engineering of biological systems that can survive changing environments or disease, navigate the deepest oceans, or sustain life throughout the solar system.
© The Author(s) 2021. Published by Oxford University Press on behalf of the Society for Integrative and Comparative Biology.

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Mesh:

Year:  2022        PMID: 34427654      PMCID: PMC8825770          DOI: 10.1093/icb/icab183

Source DB:  PubMed          Journal:  Integr Comp Biol        ISSN: 1540-7063            Impact factor:   3.392


  74 in total

1.  Network thinking in ecology and evolution.

Authors:  Stephen R Proulx; Daniel E L Promislow; Patrick C Phillips
Journal:  Trends Ecol Evol       Date:  2005-06       Impact factor: 17.712

Review 2.  Epithelial machines that shape the embryo.

Authors:  Lance A Davidson
Journal:  Trends Cell Biol       Date:  2011-11-28       Impact factor: 20.808

Review 3.  Copy number variation (CNV) and insecticide resistance in mosquitoes: evolving knowledge or an evolving problem?

Authors:  David Weetman; Luc S Djogbenou; Eric Lucas
Journal:  Curr Opin Insect Sci       Date:  2018-04-13       Impact factor: 5.186

Review 4.  Metabolic networks in motion: 13C-based flux analysis.

Authors:  Uwe Sauer
Journal:  Mol Syst Biol       Date:  2006-11-14       Impact factor: 11.429

5.  Trophic redundancy reduces vulnerability to extinction cascades.

Authors:  Dirk Sanders; Elisa Thébault; Rachel Kehoe; F J Frank van Veen
Journal:  Proc Natl Acad Sci U S A       Date:  2018-02-21       Impact factor: 11.205

6.  Single-cell transcriptomics unveils gene regulatory network plasticity.

Authors:  Giovanni Iacono; Ramon Massoni-Badosa; Holger Heyn
Journal:  Genome Biol       Date:  2019-06-04       Impact factor: 13.583

7.  Scale-free networks are rare.

Authors:  Anna D Broido; Aaron Clauset
Journal:  Nat Commun       Date:  2019-03-04       Impact factor: 14.919

8.  Rare and everywhere: Perspectives on scale-free networks.

Authors:  Petter Holme
Journal:  Nat Commun       Date:  2019-03-04       Impact factor: 14.919

9.  Untargeted Metabolomics Reveal Defensome-Related Metabolic Reprogramming in Sorghum bicolor against Infection by Burkholderia andropogonis.

Authors:  Charity R Mareya; Fidele Tugizimana; Lizelle A Piater; Ntakadzeni E Madala; Paul A Steenkamp; Ian A Dubery
Journal:  Metabolites       Date:  2019-01-02

10.  ER-to-Golgi Transport in HeLa Cells Displays High Resilience to Ca2+ and Energy Stresses.

Authors:  Thomas Rauter; Sandra Burgstaller; Benjamin Gottschalk; Jeta Ramadani-Muja; Helmut Bischof; Jesse C Hay; Wolfgang F Graier; Roland Malli
Journal:  Cells       Date:  2020-10-17       Impact factor: 7.666

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