Literature DB >> 34425496

A novel lineage of polyomaviruses identified in bark scorpions.

Kara Schmidlin1, Simona Kraberger2, Chelsea Cook3, Dale F DeNardo4, Rafaela S Fontenele1, Koenraad Van Doorslaer5, Darren P Martin6, Christopher B Buck7, Arvind Varsani8.   

Abstract

Polyomaviruses are non-enveloped viruses with circular double-stranded DNA genomes (~4-7 kb). Initially identified in mammals, polyomaviruses have now been identified in birds and a few fish species. Although fragmentary polyomavirus-like sequences have been detected as apparent 'hitchhikers' in shotgun genomics datasets of various arthropods, the possible diversity of these viruses in invertebrates remains unclear. Scorpions are predatory arachnids that are among the oldest terrestrial animals. Using high-throughput sequencing and traditional molecular techniques we determine the genome sequences of eight novel polyomaviruses in scorpions (Centruroides sculpturatus) from the greater Phoenix area, Arizona, USA. Analysis of Centruroides transcriptomic datasets elucidated the splicing of the viral late gene array, which is more complex than that of vertebrate polyomaviruses. Phylogenetic analysis provides further evidence of co-divergence of polyomaviruses with their hosts, suggesting that at least one ancestral species of polyomaviruses was circulating amongst the primitive common ancestors of arthropods and chordates.
Copyright © 2021 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Arachnida; Centruroides sculpturatus; Circular DNA virus; Polyomaviridae

Mesh:

Year:  2021        PMID: 34425496      PMCID: PMC8478886          DOI: 10.1016/j.virol.2021.08.008

Source DB:  PubMed          Journal:  Virology        ISSN: 0042-6822            Impact factor:   3.616


  29 in total

1.  MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform.

Authors:  Kazutaka Katoh; Kazuharu Misawa; Kei-ichi Kuma; Takashi Miyata
Journal:  Nucleic Acids Res       Date:  2002-07-15       Impact factor: 16.971

2.  N-Terminal myristoylation predictions by ensembles of neural networks.

Authors:  Guido Bologna; Cédric Yvon; Séverine Duvaud; Anne-Lise Veuthey
Journal:  Proteomics       Date:  2004-06       Impact factor: 3.984

3.  An allometric relationship between the genome length and virion volume of viruses.

Authors:  Jie Cui; Timothy E Schlub; Edward C Holmes
Journal:  J Virol       Date:  2014-03-26       Impact factor: 5.103

4.  Diverse circular replication-associated protein encoding viruses circulating in invertebrates within a lake ecosystem.

Authors:  Anisha Dayaram; Mark L Galatowitsch; Gerardo R Argüello-Astorga; Katherine van Bysterveldt; Simona Kraberger; Daisy Stainton; Jon S Harding; Philippe Roumagnac; Darren P Martin; Pierre Lefeuvre; Arvind Varsani
Journal:  Infect Genet Evol       Date:  2016-02-10       Impact factor: 3.342

5.  Avian polyomavirus mutants with deletions in the VP4-encoding region show deficiencies in capsid assembly and virus release, and have reduced infectivity in chicken.

Authors:  Reimar Johne; Guntram Paul; Dirk Enderlein; Tobias Stahl; Christian Grund; Hermann Müller
Journal:  J Gen Virol       Date:  2007-03       Impact factor: 3.891

6.  SDT: a virus classification tool based on pairwise sequence alignment and identity calculation.

Authors:  Brejnev Muhizi Muhire; Arvind Varsani; Darren Patrick Martin
Journal:  PLoS One       Date:  2014-09-26       Impact factor: 3.240

7.  ICTV Virus Taxonomy Profile: Polyomaviridae.

Authors:  Ugo Moens; Sébastien Calvignac-Spencer; Chris Lauber; Torbjörn Ramqvist; Mariet C W Feltkamp; Matthew D Daugherty; Ernst J Verschoor; Bernhard Ehlers
Journal:  J Gen Virol       Date:  2017-06-22       Impact factor: 3.891

8.  Virus discovery in all three major lineages of terrestrial arthropods highlights the diversity of single-stranded DNA viruses associated with invertebrates.

Authors:  Karyna Rosario; Kaitlin A Mettel; Bayleigh E Benner; Ryan Johnson; Catherine Scott; Sohath Z Yusseff-Vanegas; Christopher C M Baker; Deby L Cassill; Caroline Storer; Arvind Varsani; Mya Breitbart
Journal:  PeerJ       Date:  2018-10-11       Impact factor: 2.984

9.  Interactive Tree Of Life (iTOL) v4: recent updates and new developments.

Authors:  Ivica Letunic; Peer Bork
Journal:  Nucleic Acids Res       Date:  2019-07-02       Impact factor: 16.971

10.  The Ancient Evolutionary History of Polyomaviruses.

Authors:  Christopher B Buck; Koenraad Van Doorslaer; Alberto Peretti; Eileen M Geoghegan; Michael J Tisza; Ping An; Joshua P Katz; James M Pipas; Alison A McBride; Alvin C Camus; Alexa J McDermott; Jennifer A Dill; Eric Delwart; Terry F F Ng; Kata Farkas; Charlotte Austin; Simona Kraberger; William Davison; Diana V Pastrana; Arvind Varsani
Journal:  PLoS Pathog       Date:  2016-04-19       Impact factor: 6.823

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  2 in total

Review 1.  Diversity and evolution of the animal virome.

Authors:  Erin Harvey; Edward C Holmes
Journal:  Nat Rev Microbiol       Date:  2022-01-04       Impact factor: 60.633

2.  Long-read sequencing reveals complex patterns of wraparound transcription in polyomaviruses.

Authors:  Jason Nomburg; Wei Zou; Thomas C Frost; Chandreyee Datta; Shobha Vasudevan; Gabriel J Starrett; Michael J Imperiale; Matthew Meyerson; James A DeCaprio
Journal:  PLoS Pathog       Date:  2022-04-01       Impact factor: 7.464

  2 in total

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