Literature DB >> 34417815

Machine Learning Predictive Outcomes Modeling in Inflammatory Bowel Diseases.

Aamir Javaid1, Omer Shahab2, William Adorno3, Philip Fernandes1, Eve May4, Sana Syed1,3.   

Abstract

There is a rising interest in use of big data approaches to personalize treatment of inflammatory bowel diseases (IBDs) and to predict and prevent outcomes such as disease flares and therapeutic nonresponse. Machine learning (ML) provides an avenue to identify and quantify features across vast quantities of data to produce novel insights in disease management. In this review, we cover current approaches in ML-driven predictive outcomes modeling for IBD and relate how advances in other fields of medicine may be applied to improve future IBD predictive models. Numerous studies have incorporated clinical, laboratory, or omics data to predict significant outcomes in IBD, including hospitalizations, outpatient corticosteroid use, biologic response, and refractory disease after colectomy, among others, with considerable health care dollars saved as a result. Encouraging results in other fields of medicine support efforts to use ML image analysis-including analysis of histopathology, endoscopy, and radiology-to further advance outcome predictions in IBD. Though obstacles to clinical implementation include technical barriers, bias within data sets, and incongruence between limited data sets preventing model validation in larger cohorts, ML-predictive analytics have the potential to transform the clinical management of IBD. Future directions include the development of models that synthesize all aforementioned approaches to produce more robust predictive metrics.
© 2021 Crohn’s & Colitis Foundation. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Entities:  

Keywords:  artificial intelligence; inflammatory bowel diseases; machine learning; predictive modeling

Mesh:

Year:  2022        PMID: 34417815      PMCID: PMC9165557          DOI: 10.1093/ibd/izab187

Source DB:  PubMed          Journal:  Inflamm Bowel Dis        ISSN: 1078-0998            Impact factor:   7.290


  75 in total

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2.  Seasonal variation in onset and relapse of IBD and a model to predict the frequency of onset, relapse, and severity of IBD based on artificial neural network.

Authors:  Jiang Chen Peng; Zhi Hua Ran; Jun Shen
Journal:  Int J Colorectal Dis       Date:  2015-05-15       Impact factor: 2.571

3.  Deep learning-assisted magnetic resonance imaging prediction of tumor response to chemotherapy in patients with colorectal liver metastases.

Authors:  Hai-Bin Zhu; Da Xu; Meng Ye; Li Sun; Xiao-Yan Zhang; Xiao-Ting Li; Pei Nie; Bao-Cai Xing; Ying-Shi Sun
Journal:  Int J Cancer       Date:  2020-12-29       Impact factor: 7.396

4.  Development and Validation of a Deep Neural Network for Accurate Evaluation of Endoscopic Images From Patients With Ulcerative Colitis.

Authors:  Kento Takenaka; Kazuo Ohtsuka; Toshimitsu Fujii; Mariko Negi; Kohei Suzuki; Hiromichi Shimizu; Shiori Oshima; Shintaro Akiyama; Maiko Motobayashi; Masakazu Nagahori; Eiko Saito; Katsuyoshi Matsuoka; Mamoru Watanabe
Journal:  Gastroenterology       Date:  2020-02-12       Impact factor: 22.682

5.  Development and reliability of the new endoscopic virtual chromoendoscopy score: the PICaSSO (Paddington International Virtual ChromoendoScopy ScOre) in ulcerative colitis.

Authors:  Marietta Iacucci; Marco Daperno; Mark Lazarev; Razvan Arsenascu; Gian Eugenio Tontini; Oluseyi Akinola; Xianyong Sean Gui; Vincenzo Villanacci; Martin Goetz; Mark Lowerison; Brendan Cord Lethebe; Maurizio Vecchi; Helmut Neumann; Subrata Ghosh; Raf Bisschops; Ralf Kiesslich
Journal:  Gastrointest Endosc       Date:  2017-03-18       Impact factor: 9.427

6.  Accurate Classification of Pediatric Colonic Inflammatory Bowel Disease Subtype Using a Random Forest Machine Learning Classifier.

Authors:  Jasbir Dhaliwal; Lauren Erdman; Erik Drysdale; Firas Rinawi; Jennifer Muir; Thomas D Walters; Iram Siddiqui; Anne M Griffiths; Peter C Church
Journal:  J Pediatr Gastroenterol Nutr       Date:  2021-02-01       Impact factor: 2.839

7.  Development and Validation of Machine Learning Models in Prediction of Remission in Patients With Moderate to Severe Crohn Disease.

Authors:  Akbar K Waljee; Beth I Wallace; Shirley Cohen-Mekelburg; Yumu Liu; Boang Liu; Kay Sauder; Ryan W Stidham; Ji Zhu; Peter D R Higgins
Journal:  JAMA Netw Open       Date:  2019-05-03

8.  Predicting non-small cell lung cancer prognosis by fully automated microscopic pathology image features.

Authors:  Kun-Hsing Yu; Ce Zhang; Gerald J Berry; Russ B Altman; Christopher Ré; Daniel L Rubin; Michael Snyder
Journal:  Nat Commun       Date:  2016-08-16       Impact factor: 14.919

9.  A deep learning model to predict RNA-Seq expression of tumours from whole slide images.

Authors:  Alberto Romagnoni; Elodie Pronier; Benoît Schmauch; Charlie Saillard; Pascale Maillé; Julien Calderaro; Aurélie Kamoun; Meriem Sefta; Sylvain Toldo; Mikhail Zaslavskiy; Thomas Clozel; Matahi Moarii; Pierre Courtiol; Gilles Wainrib
Journal:  Nat Commun       Date:  2020-08-03       Impact factor: 14.919

10.  Detecting ulcerative colitis from colon samples using efficient feature selection and machine learning.

Authors:  Hanieh Marvi Khorasani; Hamid Usefi; Lourdes Peña-Castillo
Journal:  Sci Rep       Date:  2020-08-13       Impact factor: 4.379

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  1 in total

1.  PICaSSO Histologic Remission Index (PHRI) in ulcerative colitis: development of a novel simplified histological score for monitoring mucosal healing and predicting clinical outcomes and its applicability in an artificial intelligence system.

Authors:  Xianyong Gui; Alina Bazarova; Rocìo Del Amor; Vincenzo Villanacci; Michael Vieth; Gert de Hertogh; Davide Zardo; Tommaso Lorenzo Parigi; Elin Synnøve Røyset; Uday N Shivaji; Melissa Anna Teresa Monica; Giulio Mandelli; Pradeep Bhandari; Silvio Danese; Jose G Ferraz; Bu'Hussain Hayee; Mark Lazarev; Adolfo Parra-Blanco; Luca Pastorelli; Remo Panaccione; Timo Rath; Gian Eugenio Tontini; Ralf Kiesslich; Raf Bisschops; Enrico Grisan; Valery Naranjo; Subrata Ghosh; Marietta Iacucci
Journal:  Gut       Date:  2022-02-16       Impact factor: 23.059

  1 in total

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