Literature DB >> 34411545

Intein-based Design Expands Diversity of Selenocysteine Reporters.

Christina Z Chung1, Natalie Krahn2, Ana Crnković3, Dieter Söll4.   

Abstract

The presence of selenocysteine in a protein confers many unique properties that make the production of recombinant selenoproteins desirable. Targeted incorporation of Sec into a protein of choice is possible by exploiting elongation factor Tu-dependent reassignment of UAG codons, a strategy that has been continuously improved by a variety of means. Improving selenoprotein yield by directed evolution requires selection and screening markers that are titratable, have a high dynamic range, enable high-throughput screening, and can discriminate against nonspecific UAG decoding. Current screening techniques are limited to a handful of reporters where a cysteine (Cys) or Sec residue normally affords activity. Unfortunately, these existing Cys/Sec-dependent reporters lack the dynamic range of more ubiquitous reporters or suffer from other limitations. Here we present a versatile strategy to adapt established reporters for specific Sec incorporation. Inteins are intervening polypeptides that splice themselves from the precursor protein in an autocatalytic splicing reaction. Using an intein that relies exclusively on Sec for splicing, we show that this intein cassette can be placed in-frame within selection and screening markers, affording reporter activity only upon successful intein splicing. Furthermore, because functional splicing can only occur when a catalytic Sec is present, the amount of synthesized reporter directly measures UAG-directed Sec incorporation. Importantly, we show that results obtained with intein-containing reporters are comparable to the Sec incorporation levels determined by mass spectrometry of isolated recombinant selenoproteins. This result validates the use of these intein-containing reporters to screen for evolved components of a translation system yielding increased selenoprotein amounts.
Copyright © 2021 The Author(s). Published by Elsevier Ltd.. All rights reserved.

Entities:  

Keywords:  genetic code expansion; protein splicing; screening method; selection method; tRNA

Mesh:

Substances:

Year:  2021        PMID: 34411545      PMCID: PMC8847544          DOI: 10.1016/j.jmb.2021.167199

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   6.151


  35 in total

1.  Highly efficient and more general cis- and trans-splicing inteins through sequential directed evolution.

Authors:  Julia H Appleby-Tagoe; Ilka V Thiel; Yi Wang; Yanfei Wang; Henning D Mootz; Xiang-Qin Liu
Journal:  J Biol Chem       Date:  2011-08-08       Impact factor: 5.157

2.  Engineering and characterization of a superfolder green fluorescent protein.

Authors:  Jean-Denis Pédelacq; Stéphanie Cabantous; Timothy Tran; Thomas C Terwilliger; Geoffrey S Waldo
Journal:  Nat Biotechnol       Date:  2005-12-20       Impact factor: 54.908

3.  Engineered Aminoacyl-tRNA Synthetases with Improved Selectivity toward Noncanonical Amino Acids.

Authors:  Hui Si Kwok; Oscar Vargas-Rodriguez; Sergey V Melnikov; Dieter Söll
Journal:  ACS Chem Biol       Date:  2019-04-09       Impact factor: 5.100

4.  Structure-guided optimization of protein kinase inhibitors reverses aminoglycoside antibiotic resistance.

Authors:  Peter J Stogios; Peter Spanogiannopoulos; Elena Evdokimova; Olga Egorova; Tushar Shakya; Nick Todorovic; Alfredo Capretta; Gerard D Wright; Alexei Savchenko
Journal:  Biochem J       Date:  2013-09-01       Impact factor: 3.857

Review 5.  An introduction to methods for analyzing thiols and disulfides: Reactions, reagents, and practical considerations.

Authors:  Rosa E Hansen; Jakob R Winther
Journal:  Anal Biochem       Date:  2009-08-05       Impact factor: 3.365

6.  Selenocysteine-Mediated Expressed Protein Ligation of SELENOM.

Authors:  Jun Liu; Qingqing Chen; Sharon Rozovsky
Journal:  Methods Mol Biol       Date:  2018

Review 7.  Selenium versus sulfur: Reversibility of chemical reactions and resistance to permanent oxidation in proteins and nucleic acids.

Authors:  Michael J Maroney; Robert J Hondal
Journal:  Free Radic Biol Med       Date:  2018-03-26       Impact factor: 7.376

Review 8.  Synthesis and decoding of selenocysteine and human health.

Authors:  Rachel L Schmidt; Miljan Simonović
Journal:  Croat Med J       Date:  2012-12       Impact factor: 1.351

9.  Highly reproductive Escherichia coli cells with no specific assignment to the UAG codon.

Authors:  Takahito Mukai; Hiroko Hoshi; Kazumasa Ohtake; Mihoko Takahashi; Atsushi Yamaguchi; Akiko Hayashi; Shigeyuki Yokoyama; Kensaku Sakamoto
Journal:  Sci Rep       Date:  2015-05-18       Impact factor: 4.379

Review 10.  The role of selenium metabolism and selenoproteins in cartilage homeostasis and arthropathies.

Authors:  Donghyun Kang; Jeeyeon Lee; Cuiyan Wu; Xiong Guo; Byeong Jae Lee; Jang-Soo Chun; Jin-Hong Kim
Journal:  Exp Mol Med       Date:  2020-08-13       Impact factor: 8.718

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  2 in total

1.  Using selenocysteine-specific reporters to screen for efficient tRNASec variants.

Authors:  Christina Z Chung; Dieter Söll; Natalie Krahn
Journal:  Methods Enzymol       Date:  2021-11-14       Impact factor: 1.600

2.  Uncovering translation roadblocks during the development of a synthetic tRNA.

Authors:  Arjun Prabhakar; Natalie Krahn; Jingji Zhang; Oscar Vargas-Rodriguez; Miri Krupkin; Ziao Fu; Francisco J Acosta-Reyes; Xueliang Ge; Junhong Choi; Ana Crnković; Måns Ehrenberg; Elisabetta Viani Puglisi; Dieter Söll; Joseph Puglisi
Journal:  Nucleic Acids Res       Date:  2022-10-14       Impact factor: 19.160

  2 in total

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