Literature DB >> 34406447

Significance of lncRNA abundance to function.

Ioannis Grammatikakis1, Ashish Lal2.   

Abstract

Long noncoding RNAs (lncRNAs) have emerged as regulators of diverse cellular processes. Although the vast majority of lncRNAs are expressed at lower levels compared to messenger RNAs (mRNAs), many lncRNAs play a central role in the regulation of cellular homeostasis and gene expression. With the advancement of next generation sequencing technologies, recent studies illustrate the diversity of lncRNA function. This diversity can be due to differences in their mechanisms of action, spatio-temporal expression, and/or abundance, all of which can vary depending on the particular cell type or tissue. Here, we discuss how the abundance of lncRNAs is an important feature that is often linked to their functions, and why it is crucial to quantitate lncRNA abundance, its local concentration within a cell or a tissue or the dynamic changes in expression levels during cell cycle progression or upon environmental stimuli, to shed light on their physiological roles.
© 2021. This is a U.S. government work and not under copyright protection in the U.S.; foreign copyright protection may apply.

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Year:  2021        PMID: 34406447     DOI: 10.1007/s00335-021-09901-4

Source DB:  PubMed          Journal:  Mamm Genome        ISSN: 0938-8990            Impact factor:   2.957


  75 in total

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Journal:  Cell       Date:  2015-01-29       Impact factor: 41.582

2.  How much non-coding DNA do eukaryotes require?

Authors:  Sebastian E Ahnert; Thomas M A Fink; Andrei Zinovyev
Journal:  J Theor Biol       Date:  2008-02-14       Impact factor: 2.691

3.  Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses.

Authors:  Moran N Cabili; Cole Trapnell; Loyal Goff; Magdalena Koziol; Barbara Tazon-Vega; Aviv Regev; John L Rinn
Journal:  Genes Dev       Date:  2011-09-02       Impact factor: 11.361

4.  Phase separation drives X-chromosome inactivation: a hypothesis.

Authors:  Andrea Cerase; Alexandros Armaos; Christoph Neumayer; Philip Avner; Mitchell Guttman; Gian Gaetano Tartaglia
Journal:  Nat Struct Mol Biol       Date:  2019-05       Impact factor: 15.369

5.  Prosurvival long noncoding RNA PINCR regulates a subset of p53 targets in human colorectal cancer cells by binding to Matrin 3.

Authors:  Ritu Chaudhary; Berkley Gryder; Wendy S Woods; Murugan Subramanian; Matthew F Jones; Xiao Ling Li; Lisa M Jenkins; Svetlana A Shabalina; Min Mo; Mary Dasso; Yuan Yang; Lalage M Wakefield; Yuelin Zhu; Susan M Frier; Branden S Moriarity; Kannanganattu V Prasanth; Pablo Perez-Pinera; Ashish Lal
Journal:  Elife       Date:  2017-06-05       Impact factor: 8.140

6.  Endogenous miRNA and target concentrations determine susceptibility to potential ceRNA competition.

Authors:  Andrew D Bosson; Jesse R Zamudio; Phillip A Sharp
Journal:  Mol Cell       Date:  2014-10-23       Impact factor: 17.970

7.  Transcription of the non-coding RNA upperhand controls Hand2 expression and heart development.

Authors:  Kelly M Anderson; Douglas M Anderson; John R McAnally; John M Shelton; Rhonda Bassel-Duby; Eric N Olson
Journal:  Nature       Date:  2016-10-26       Impact factor: 49.962

8.  Localization and abundance analysis of human lncRNAs at single-cell and single-molecule resolution.

Authors:  Moran N Cabili; Margaret C Dunagin; Patrick D McClanahan; Andrew Biaesch; Olivia Padovan-Merhar; Aviv Regev; John L Rinn; Arjun Raj
Journal:  Genome Biol       Date:  2015-01-29       Impact factor: 13.583

Review 9.  Long noncoding RNAs in imprinting and X chromosome inactivation.

Authors:  Joseph M Autuoro; Stephan P Pirnie; Gordon G Carmichael
Journal:  Biomolecules       Date:  2014-01-07

10.  Differentiation of mammary tumors and reduction in metastasis upon Malat1 lncRNA loss.

Authors:  Gayatri Arun; Sarah Diermeier; Martin Akerman; Kung-Chi Chang; J Erby Wilkinson; Stephen Hearn; Youngsoo Kim; A Robert MacLeod; Adrian R Krainer; Larry Norton; Edi Brogi; Mikala Egeblad; David L Spector
Journal:  Genes Dev       Date:  2015-12-23       Impact factor: 11.361

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  3 in total

Review 1.  Zooming in on Long Non-Coding RNAs in Ewing Sarcoma Pathogenesis.

Authors:  Dave N T Aryee; Valerie Fock; Utkarsh Kapoor; Branka Radic-Sarikas; Heinrich Kovar
Journal:  Cells       Date:  2022-04-08       Impact factor: 7.666

Review 2.  Long Non Coding RNA Based Regulation of Cerebrovascular Endothelium.

Authors:  Samatha Mathew; Sridhar Sivasubbu
Journal:  Front Genet       Date:  2022-04-13       Impact factor: 4.772

3.  An Evolutionarily Conserved AU-Rich Element in the 3' Untranslated Region of a Transcript Misannotated as a Long Noncoding RNA Regulates RNA Stability.

Authors:  Emily A Dangelmaier; Xiao Ling Li; Corrine Corrina R Hartford; Julianna C King; Meira S Zibitt; Raj Chari; Ioannis Grammatikakis; Ashish Lal
Journal:  Mol Cell Biol       Date:  2022-03-11       Impact factor: 5.069

  3 in total

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