Literature DB >> 34404723

Atomic view of cosolute-induced protein denaturation probed by NMR solvent paramagnetic relaxation enhancement.

Yusuke Okuno1, Janghyun Yoo1, Charles D Schwieters1, Robert B Best1, Hoi Sung Chung1, G Marius Clore2.   

Abstract

The cosolvent effect arises from the interaction of cosolute molecules with a protein and alters the equilibrium between native and unfolded states. Denaturants shift the equilibrium toward the latter, while osmolytes stabilize the former. The molecular mechanism whereby cosolutes perturb protein stability is still the subject of considerable debate. Probing the molecular details of the cosolvent effect is experimentally challenging as the interactions are very weak and transient, rendering them invisible to most conventional biophysical techniques. Here, we probe cosolute-protein interactions by means of NMR solvent paramagnetic relaxation enhancement together with a formalism we recently developed to quantitatively describe, at atomic resolution, the energetics and dynamics of cosolute-protein interactions in terms of a concentration normalized equilibrium average of the interspin distance, [Formula: see text], and an effective correlation time, τc The system studied is the metastable drkN SH3 domain, which exists in dynamic equilibrium between native and unfolded states, thereby permitting us to probe the interactions of cosolutes with both states simultaneously under the same conditions. Two paramagnetic cosolute denaturants were investigated, one neutral and the other negatively charged, differing in the presence of a carboxyamide group versus a carboxylate. Our results demonstrate that attractive cosolute-protein backbone interactions occur largely in the unfolded state and some loop regions in the native state, electrostatic interactions reduce the [Formula: see text] values, and temperature predominantly impacts interactions with the unfolded state. Thus, destabilization of the native state in this instance arises predominantly as a consequence of interactions of the cosolutes with the unfolded state.

Entities:  

Keywords:  NMR relaxation; drkN SH3 native and unfolded states; protein–cosolute interactions; replica exchange molecular dynamics; transient states

Mesh:

Substances:

Year:  2021        PMID: 34404723      PMCID: PMC8403838          DOI: 10.1073/pnas.2112021118

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   12.779


  47 in total

1.  Cooperative interactions and a non-native buried Trp in the unfolded state of an SH3 domain.

Authors:  Karin A Crowhurst; Martin Tollinger; Julie D Forman-Kay
Journal:  J Mol Biol       Date:  2002-09-06       Impact factor: 5.469

2.  Some factors in the interpretation of protein denaturation.

Authors:  W KAUZMANN
Journal:  Adv Protein Chem       Date:  1959

3.  Anatomy of energetic changes accompanying urea-induced protein denaturation.

Authors:  Matthew Auton; Luis Marcelo F Holthauzen; D Wayne Bolen
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-18       Impact factor: 11.205

4.  Urea orientation at protein surfaces.

Authors:  Xin Chen; Laura B Sagle; Paul S Cremer
Journal:  J Am Chem Soc       Date:  2007-11-15       Impact factor: 15.419

5.  Polymer scaling laws of unfolded and intrinsically disordered proteins quantified with single-molecule spectroscopy.

Authors:  Hagen Hofmann; Andrea Soranno; Alessandro Borgia; Klaus Gast; Daniel Nettels; Benjamin Schuler
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-14       Impact factor: 11.205

6.  Structural characterization of folded and unfolded states of an SH3 domain in equilibrium in aqueous buffer.

Authors:  O Zhang; J D Forman-Kay
Journal:  Biochemistry       Date:  1995-05-23       Impact factor: 3.162

7.  Characterization of the hydrodynamic properties of the folding transition state of an SH3 domain by magnetization transfer NMR spectroscopy.

Authors:  Martin Tollinger; Chris Neale; Lewis E Kay; Julie D Forman-Kay
Journal:  Biochemistry       Date:  2006-05-23       Impact factor: 3.162

8.  Quantitative Interpretation of Solvent Paramagnetic Relaxation for Probing Protein-Cosolute Interactions.

Authors:  Yusuke Okuno; Attila Szabo; G Marius Clore
Journal:  J Am Chem Soc       Date:  2020-04-24       Impact factor: 15.419

9.  Empirical Optimization of Interactions between Proteins and Chemical Denaturants in Molecular Simulations.

Authors:  Wenwei Zheng; Alessandro Borgia; Madeleine B Borgia; Benjamin Schuler; Robert B Best
Journal:  J Chem Theory Comput       Date:  2015-10-13       Impact factor: 6.006

Review 10.  Structure and energetics of the hydrogen-bonded backbone in protein folding.

Authors:  D Wayne Bolen; George D Rose
Journal:  Annu Rev Biochem       Date:  2008       Impact factor: 23.643

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