Literature DB >> 34387838

Overview of SARS-CoV-2 genome-encoded proteins.

Chongzhi Bai1,2,3, Qiming Zhong2, George Fu Gao4,5.   

Abstract

Severe acute respiratory syndrome Coronavirus 2 (SARS-CoV-2) has spread rapidly throughout the world. SARS-CoV-2 is an enveloped, plus-stranded RNA virus with a single-stranded RNA genome of approximately 30,000 nucleotides. The SARS-CoV-2 genome encodes 29 proteins, including 16 nonstructural, 4 structural and 9 accessory proteins. To date, over 1,228 experimental structures of SARS-CoV-2 proteins have been deposited in the Protein Data Bank (PDB), including 16 protein structures, two functional domain structures of nucleocapsid (N) protein, and scores of complexes. Overall, they exhibit high similarity to SARS-CoV proteins. Here, we summarize the progress of structural and functional research on SARS-CoV-2 proteins. These studies provide structural and functional insights into proteins of SARS-CoV-2, and further elucidate the daedal relationship between different components at the atomic level in the viral life cycle, including attachment to the host cell, viral genome replication and transcription, genome packaging and assembly, and virus release. It is important to understand the structural and functional properties of SARS-CoV-2 proteins as it will facilitate the development of anti-CoV drugs and vaccines to prevent and control the current SARS-CoV-2 pandemic.
© 2022. Science China Press and Springer-Verlag GmbH Germany, part of Springer Nature.

Entities:  

Keywords:  SARS-CoV-2; biological impact; coronavirus; structural and functional characterization; structure and function-based drug discovery

Mesh:

Substances:

Year:  2021        PMID: 34387838      PMCID: PMC8362648          DOI: 10.1007/s11427-021-1964-4

Source DB:  PubMed          Journal:  Sci China Life Sci        ISSN: 1674-7305            Impact factor:   10.372


  114 in total

1.  The Severe Acute Respiratory Syndrome Coronavirus Nucleocapsid Inhibits Type I Interferon Production by Interfering with TRIM25-Mediated RIG-I Ubiquitination.

Authors:  Yong Hu; Wei Li; Ting Gao; Yan Cui; Yanwen Jin; Ping Li; Qingjun Ma; Xuan Liu; Cheng Cao
Journal:  J Virol       Date:  2017-03-29       Impact factor: 5.103

2.  The nsp2 proteins of mouse hepatitis virus and SARS coronavirus are dispensable for viral replication.

Authors:  Rachel L Graham; Amy C Sims; Ralph S Baric; Mark R Denison
Journal:  Adv Exp Med Biol       Date:  2006       Impact factor: 2.622

3.  p53 down-regulates SARS coronavirus replication and is targeted by the SARS-unique domain and PLpro via E3 ubiquitin ligase RCHY1.

Authors:  Yue Ma-Lauer; Javier Carbajo-Lozoya; Marco Y Hein; Marcel A Müller; Wen Deng; Jian Lei; Benjamin Meyer; Yuri Kusov; Brigitte von Brunn; Dev Raj Bairad; Sabine Hünten; Christian Drosten; Heiko Hermeking; Heinrich Leonhardt; Matthias Mann; Rolf Hilgenfeld; Albrecht von Brunn
Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-12       Impact factor: 11.205

4.  Structure of Mpro from SARS-CoV-2 and discovery of its inhibitors.

Authors:  Zhenming Jin; Xiaoyu Du; Yechun Xu; Yongqiang Deng; Meiqin Liu; Yao Zhao; Bing Zhang; Xiaofeng Li; Leike Zhang; Chao Peng; Yinkai Duan; Jing Yu; Lin Wang; Kailin Yang; Fengjiang Liu; Rendi Jiang; Xinglou Yang; Tian You; Xiaoce Liu; Xiuna Yang; Fang Bai; Hong Liu; Xiang Liu; Luke W Guddat; Wenqing Xu; Gengfu Xiao; Chengfeng Qin; Zhengli Shi; Hualiang Jiang; Zihe Rao; Haitao Yang
Journal:  Nature       Date:  2020-04-09       Impact factor: 49.962

5.  Cryo-EM structure of the 2019-nCoV spike in the prefusion conformation.

Authors:  Daniel Wrapp; Nianshuang Wang; Kizzmekia S Corbett; Jory A Goldsmith; Ching-Lin Hsieh; Olubukola Abiona; Barney S Graham; Jason S McLellan
Journal:  Science       Date:  2020-02-19       Impact factor: 47.728

6.  A familial cluster of pneumonia associated with the 2019 novel coronavirus indicating person-to-person transmission: a study of a family cluster.

Authors:  Jasper Fuk-Woo Chan; Shuofeng Yuan; Kin-Hang Kok; Kelvin Kai-Wang To; Hin Chu; Jin Yang; Fanfan Xing; Jieling Liu; Cyril Chik-Yan Yip; Rosana Wing-Shan Poon; Hoi-Wah Tsoi; Simon Kam-Fai Lo; Kwok-Hung Chan; Vincent Kwok-Man Poon; Wan-Mui Chan; Jonathan Daniel Ip; Jian-Piao Cai; Vincent Chi-Chung Cheng; Honglin Chen; Christopher Kim-Ming Hui; Kwok-Yung Yuen
Journal:  Lancet       Date:  2020-01-24       Impact factor: 79.321

7.  Priming with rAAV encoding RBD of SARS-CoV S protein and boosting with RBD-specific peptides for T cell epitopes elevated humoral and cellular immune responses against SARS-CoV infection.

Authors:  Lanying Du; Guangyu Zhao; Yongping Lin; Chris Chan; Yuxian He; Shibo Jiang; Changyou Wu; Dong-Yan Jin; Kwok-Yung Yuen; Yusen Zhou; Bo-Jian Zheng
Journal:  Vaccine       Date:  2008-02-04       Impact factor: 3.641

8.  Crystal structure of Nsp15 endoribonuclease NendoU from SARS-CoV-2.

Authors:  Youngchang Kim; Robert Jedrzejczak; Natalia I Maltseva; Mateusz Wilamowski; Michael Endres; Adam Godzik; Karolina Michalska; Andrzej Joachimiak
Journal:  Protein Sci       Date:  2020-05-02       Impact factor: 6.993

9.  Structural model of the SARS coronavirus E channel in LMPG micelles.

Authors:  Wahyu Surya; Yan Li; Jaume Torres
Journal:  Biochim Biophys Acta Biomembr       Date:  2018-02-21       Impact factor: 3.747

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  12 in total

1.  MERS-CoV endoribonuclease and accessory proteins jointly evade host innate immunity during infection of lung and nasal epithelial cells.

Authors:  Courtney E Comar; Clayton J Otter; Jessica Pfannenstiel; Ethan Doerger; David M Renner; Li Hui Tan; Stanley Perlman; Noam A Cohen; Anthony R Fehr; Susan R Weiss
Journal:  Proc Natl Acad Sci U S A       Date:  2022-05-20       Impact factor: 12.779

2.  Electrospun nanofibrous membrane with antibacterial and antiviral properties decorated with Myoporum bontioides extract and silver-doped carbon nitride nanoparticles for medical masks application.

Authors:  Pinhong Chen; Zhi Yang; Zhuoxian Mai; Ziyun Huang; Yongshuang Bian; Shangjing Wu; Xianming Dong; Xianjun Fu; Frank Ko; Shiying Zhang; Wenxu Zheng; Shengsen Zhang; Wuyi Zhou
Journal:  Sep Purif Technol       Date:  2022-06-24       Impact factor: 9.136

3.  Cleavage of the selective autophagy receptor SQSTM1/p62 by the SARS-CoV-2 main protease NSP5 prevents the autophagic degradation of viral membrane proteins.

Authors:  Yabin Zhang; Shiyan Liu; Qingjia Xu; Huihui Li; Kefeng Lu
Journal:  Mol Biomed       Date:  2022-06-03

4.  Studying bona fide SARS-CoV-2 biology in a BSL-2 biosafety environment using a split-virus-genome system.

Authors:  Yingxin Ma; Guobin Mao; Weishan Yang; Guoqiang Wu; Guoqiang Li; Xiaoying Li; Xin Lin; Junnan Lu; Shijun Zhao; Wei Zhao; Junbiao Dai; Xian-En Zhang
Journal:  Sci China Life Sci       Date:  2022-05-12       Impact factor: 10.372

5.  Conserved protein targets for developing pan-coronavirus drugs based on sequence and 3D structure similarity analyses.

Authors:  Minfei Ma; Yanqing Yang; Leyun Wu; Liping Zhou; Yulong Shi; Jiaxin Han; Zhijian Xu; Weiliang Zhu
Journal:  Comput Biol Med       Date:  2022-03-26       Impact factor: 6.698

Review 6.  Pharmaceutical Prospects of Curcuminoids for the Remedy of COVID-19: Truth or Myth.

Authors:  Yaw-Syan Fu; Wan-Yi Ho; Ning Kang; May-Jywan Tsai; Jingyi Wu; Liyue Huang; Ching-Feng Weng
Journal:  Front Pharmacol       Date:  2022-04-14       Impact factor: 5.988

Review 7.  Translational Control of COVID-19 and Its Therapeutic Implication.

Authors:  Dejiu Zhang; Lei Zhu; Yin Wang; Peifeng Li; Yanyan Gao
Journal:  Front Immunol       Date:  2022-03-29       Impact factor: 7.561

8.  Identifying Structural Features of Nucleotide Analogues to Overcome SARS-CoV-2 Exonuclease Activity.

Authors:  Xuanting Wang; Chuanjuan Tao; Irina Morozova; Sergey Kalachikov; Xiaoxu Li; Shiv Kumar; James J Russo; Jingyue Ju
Journal:  Viruses       Date:  2022-06-28       Impact factor: 5.818

9.  The highly conserved RNA-binding specificity of nucleocapsid protein facilitates the identification of drugs with broad anti-coronavirus activity.

Authors:  Shaorong Fan; Wenju Sun; Ligang Fan; Nan Wu; Wei Sun; Haiqian Ma; Siyuan Chen; Zitong Li; Yu Li; Jilin Zhang; Jian Yan
Journal:  Comput Struct Biotechnol J       Date:  2022-09-08       Impact factor: 6.155

10.  SARS-CoV-2 Membrane Protein: From Genomic Data to Structural New Insights.

Authors:  Catarina Marques-Pereira; Manuel N Pires; Raquel P Gouveia; Nádia N Pereira; Ana B Caniceiro; Nícia Rosário-Ferreira; Irina S Moreira
Journal:  Int J Mol Sci       Date:  2022-03-10       Impact factor: 5.923

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