| Literature DB >> 34387015 |
Guido V Janssen1,2, Susan Zhang3, Remco Merkx2, Christa Schiesswohl4, Champak Chatterjee4, K Heran Darwin3, Paul P Geurink1,2, Gerbrand J van der Heden van Noort1,2, Huib Ovaa1,2.
Abstract
Tuberculosis is a global health problem caused by infection with the Mycobacterium tuberculosis (Mtb) bacteria. Although antibiotic treatment has dramatically reduced the impact of tuberculosis on the population, the existence and spreading of drug resistant strains urgently demands the development of new drugs that target Mtb in a different manner than currently used antibiotics. The prokaryotic ubiquitin-like protein (Pup) proteasome system is an attractive target for new drug development as it is unique to Mtb and related bacterial genera. Using a Pup-based fluorogenic substrate, we screened for inhibitors of Dop, the Mtb depupylating protease, and identified I-OMe-Tyrphostin AG538 (1) and Tyrphostin AG538 (2). The hits were validated and determined to be fast-reversible, non-ATP competitive inhibitors. We synthesized >25 analogs of 1 and 2 and show that several of the synthesized compounds also inhibit the depupylation actions of Dop on native substrate, FabD-Pup. Importantly, the pupylation activity of PafA, the sole Pup ligase in Mtb, was also inhibited by some of these compounds.Entities:
Keywords: Mycobacterium tuberculosis; inhibitor screen; pup proteasome system; tuberculosis
Mesh:
Substances:
Year: 2021 PMID: 34387015 PMCID: PMC8596589 DOI: 10.1002/cbic.202100333
Source DB: PubMed Journal: Chembiochem ISSN: 1439-4227 Impact factor: 3.164
Figure 1A) Schematic representation of the main enzymatic functions in the Pup‐proteasome system in Mtb. B) Fluorogenic assay to monitor Dop activity and screen for inhibitors.
Figure 2A) chemical structures for compounds 1 and 2; B) IC50 curves for compounds 1 and 2; C) jump‐dilution assay, D) IC50 dependency at varying ATP concentrations.
Figure 3Focus areas for the SAR study. A) Modification of the Tyrphostin core. B) IC50 values for compounds 5 A, 12–14. [a] The reported values are the means of one experiment±SD run in triplicate.
IC50 values of the synthesized analogues on Dop activity.
|
| |||||||||
|---|---|---|---|---|---|---|---|---|---|
|
Entry |
Comp |
R1 |
R2 |
IC50 [μM][a] |
Entry |
Comp |
R1 |
R2 |
IC50 [μM][a] |
|
1 |
|
|
|
5.4±0.5 |
14 |
|
|
|
>100 |
|
2 |
|
|
|
>100 |
15 |
|
|
|
>100 |
|
3 |
|
|
|
>100 |
16 |
|
|
|
4.1±0.1 |
|
4 |
|
|
|
>100 |
17 |
|
|
|
96±10 |
|
5 |
|
|
|
32±10 |
18 |
|
|
|
>100 |
|
6 |
|
|
|
23±5 |
19 |
|
|
|
>100 |
|
7 |
|
|
|
26±5 |
20 |
|
|
|
41±1 |
|
8 |
|
|
|
>100 |
21 |
|
|
|
>100 |
|
9 |
|
|
|
>100 |
22 |
|
|
|
1.7±0.05 |
|
10 |
|
|
|
72±6 |
23 |
|
|
|
2.7±0.2 |
|
11 |
|
|
|
28±2 |
24 |
|
|
|
13±2 |
|
12 |
|
|
|
20±3 |
25 |
|
|
|
0.29±0.01 |
|
13 |
|
|
|
>100 | |||||
[a] The reported values are the means of one experiment±SD run in triplicate. [b] Obtained from a commercial supplier.
Scheme 1Synthetic routes for the synthesis of compounds 5 and 10.
Figure 4Depupylation of FabD‐Pup by Dop. A) Structures of the eight selected compounds. B) Effect of the inhibitors (100 μM) on the depupylation reaction of FabD‐Pup by Dop. Proteins were analyzed by immunoblotting using antibodies against Mtb FabD‐His6. Note that FabD can be pupylated on any one of four lysines, resulting in two slightly different migration patterns.
Figure 5Inhibition of depupylation of Mtb proteasome substrates by PafA. A) Effect of the inhibitors (100 μM) on the depupylation of FabD‐Pup by PafA. B) Effect of the inhibitors on the depupylation of Ino1‐Pup by PafA. Note: Ino1 forms tetramers in which two molecules in each tetramer are pupylated; therefore, Ino1 and Ino1‐Pup co‐purify as a 2 : 2 complex.