Literature DB >> 34384035

DNA methylation as a mediator of associations between the environment and chronic diseases: A scoping review on application of mediation analysis.

Ryosuke Fujii1, Shuntaro Sato2, Yoshiki Tsuboi1, Andres Cardenas3, Koji Suzuki1.   

Abstract

DNA methylation (DNAm) is one of the most studied epigenetic modifications. DNAm has emerged as a key biological mechanism and biomarkers to test associations between environmental exposure and outcomes in epidemiological studies. Although previous studies have focused on associations between DNAm and either exposure/outcomes, it is useful to test for mediation of the association between exposure and outcome by DNAm. The purpose of this scoping review is to introduce the methodological essence of statistical mediation analysis and to examine emerging epidemiological research applying mediation analyses. We conducted this scoping review for published peer-reviewed journals on this topic using online databases (PubMed, Scopus, Cochrane, and CINAHL) ending in December 2020. We extracted a total of 219 articles by initial screening. After reviewing titles, abstracts, and full texts, a total of 69 articles were eligible for this review. The breakdown of studies assigned to each category was 13 for smoking (18.8%), 8 for dietary intake and famine (11.6%), 6 for other lifestyle factors (8.7%), 8 for clinical endpoints (11.6%), 22 for environmental chemical exposures (31.9%), 2 for socioeconomic status (SES) (2.9%), and 10 for genetic factors and race (14.5%). In this review, we provide an exposure-wide summary for the mediation analysis using DNAm levels. However, we found heterogenous methods and interpretations in mediation analysis with typical issues such as different cell compositions and tissue-specificity. Further accumulation of evidence with diverse exposures, populations and with rigorous methodology will be expected to provide further insight in the role of DNAm in disease susceptibility.

Entities:  

Keywords:  DNA methylation; environmental factors; epidemiology; epigenetics; mediation analysis

Mesh:

Year:  2021        PMID: 34384035      PMCID: PMC9336467          DOI: 10.1080/15592294.2021.1959736

Source DB:  PubMed          Journal:  Epigenetics        ISSN: 1559-2294            Impact factor:   4.861


  120 in total

1.  Differential DNA methylation in blood as a mediator of the association between cigarette smoking and bladder cancer risk among postmenopausal women.

Authors:  Kristina M Jordahl; Amanda I Phipps; Timothy W Randolph; Hilary A Tindle; Simin Liu; Lesley F Tinker; Karl T Kelsey; Emily White; Parveen Bhatti
Journal:  Epigenetics       Date:  2019-06-23       Impact factor: 4.528

2.  Incidence and functional consequences of hMLH1 promoter hypermethylation in colorectal carcinoma.

Authors:  J G Herman; A Umar; K Polyak; J R Graff; N Ahuja; J P Issa; S Markowitz; J K Willson; S R Hamilton; K W Kinzler; M F Kane; R D Kolodner; B Vogelstein; T A Kunkel; S B Baylin
Journal:  Proc Natl Acad Sci U S A       Date:  1998-06-09       Impact factor: 11.205

3.  Dietary fish and ω-3 polyunsaturated fatty acids are associated with leukocyte ABCA1 DNA methylation levels.

Authors:  Ryosuke Fujii; Hiroya Yamada; Eiji Munetsuna; Mirai Yamazaki; Genki Mizuno; Yoshitaka Ando; Keisuke Maeda; Yoshiki Tsuboi; Koji Ohashi; Hiroaki Ishikawa; Chiharu Hagiwara; Kenji Wakai; Shuji Hashimoto; Nobuyuki Hamajima; Koji Suzuki
Journal:  Nutrition       Date:  2020-07-21       Impact factor: 4.008

4.  Associations between dietary vitamin intake, ABCA1 gene promoter DNA methylation, and lipid profiles in a Japanese population.

Authors:  Ryosuke Fujii; Hiroya Yamada; Eiji Munetsuna; Mirai Yamazaki; Yoshitaka Ando; Genki Mizuno; Yoshiki Tsuboi; Koji Ohashi; Hiroaki Ishikawa; Chiharu Hagiwara; Keisuke Maeda; Shuji Hashimoto; Koji Suzuki
Journal:  Am J Clin Nutr       Date:  2019-11-01       Impact factor: 7.045

5.  Low cigarette consumption and risk of coronary heart disease and stroke: meta-analysis of 141 cohort studies in 55 study reports.

Authors:  Allan Hackshaw; Joan K Morris; Sadie Boniface; Jin-Ling Tang; Dušan Milenković
Journal:  BMJ       Date:  2018-01-24

Review 6.  Multi-omics approaches to disease.

Authors:  Yehudit Hasin; Marcus Seldin; Aldons Lusis
Journal:  Genome Biol       Date:  2017-05-05       Impact factor: 13.583

7.  Association of smoking habits with TXNIP DNA methylation levels in leukocytes among general Japanese population.

Authors:  Keisuke Maeda; Hiroya Yamada; Eiji Munetsuna; Ryosuke Fujii; Mirai Yamazaki; Yoshitaka Ando; Genki Mizuno; Hiroaki Ishikawa; Koji Ohashi; Yoshiki Tsuboi; Shuji Hashimoto; Nobuyuki Hamajima; Koji Suzuki
Journal:  PLoS One       Date:  2020-07-01       Impact factor: 3.240

8.  DNA methylation arrays as surrogate measures of cell mixture distribution.

Authors:  Eugene Andres Houseman; William P Accomando; Devin C Koestler; Brock C Christensen; Carmen J Marsit; Heather H Nelson; John K Wiencke; Karl T Kelsey
Journal:  BMC Bioinformatics       Date:  2012-05-08       Impact factor: 3.169

9.  DNA methylation of the INSR gene as a mediator of the association between prenatal exposure to famine and adulthood waist circumference.

Authors:  Zhenghe Wang; Jieyun Song; Changwei Li; Yanhui Li; Luqi Shen; Bin Dong; Zhiyong Zou; Jun Ma
Journal:  Sci Rep       Date:  2020-07-22       Impact factor: 4.379

10.  Effect of exercise training for five years on all cause mortality in older adults-the Generation 100 study: randomised controlled trial.

Authors:  Dorthe Stensvold; Hallgeir Viken; Sigurd L Steinshamn; Håvard Dalen; Asbjørn Støylen; Jan P Loennechen; Line S Reitlo; Nina Zisko; Fredrik H Bækkerud; Atefe R Tari; Silvana B Sandbakk; Trude Carlsen; Jan E Ingebrigtsen; Stian Lydersen; Erney Mattsson; Sigmund A Anderssen; Maria A Fiatarone Singh; Jeff S Coombes; Eirik Skogvoll; Lars J Vatten; Jorunn L Helbostad; Øivind Rognmo; Ulrik Wisløff
Journal:  BMJ       Date:  2020-10-07
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  3 in total

1.  High-Dimensional DNA Methylation Mediates the Effect of Smoking on Crohn's Disease.

Authors:  Tingting Wang; Pingtian Xia; Ping Su
Journal:  Front Genet       Date:  2022-04-05       Impact factor: 4.772

Review 2.  Intersection of Epigenetic and Immune Alterations: Implications for Fetal Alcohol Spectrum Disorder and Mental Health.

Authors:  Alexandre A Lussier; Tamara S Bodnar; Joanne Weinberg
Journal:  Front Neurosci       Date:  2021-12-03       Impact factor: 4.677

3.  Does DNA methylation mediate the association of age at puberty with forced vital capacity or forced expiratory volume in 1 s?

Authors:  Liang Li; Hongmei Zhang; John W Holloway; Susan Ewart; Caroline L Relton; S Hasan Arshad; Wilfried Karmaus
Journal:  ERJ Open Res       Date:  2022-02-28
  3 in total

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