Literature DB >> 34383169

Transposable elements expression in Rhinella marina (cane toad) specimens submitted to immune and stress challenge.

Adriana Ludwig1, Michelle Orane Schemberger2, Camilla Borges Gazolla3, Joana de Moura Gama3, Iraine Duarte3, Ana Luisa Kalb Lopes1,4, Carolina Mathias3, Desirrê Alexia Lourenço Petters-Vandresen3, Michelle Louise Zattera3, Daniel Pacheco Bruschi5,6.   

Abstract

Transposable elements (TEs) are important components of eukaryotic genomes and compose around 30% of the genome of Rhinella marina, an invasive toad species. Considering the possible role of TEs in the adaptation of populations, we have analyzed the expression of TEs in publicly available spleen tissue transcriptomic data generated for this species after immune and stress challenge. By analyzing the transcriptome assembly, we detected a high number of TE segments. Moreover, some distinct TE families were differentially expressed in some conditions. Our result shows that several TEs are capable of being transcribed in R. marina and they could help to generate a rapid response of specimens to the environment. Also, we can suggest that these TEs could be activated in the germinative cells as well producing variability to be selected and shaped by the evolutionary processes behind the success of this invasive species. Thus, the TEs are important targets for investigation in the context of R. marina adaptation.
© 2021. The Author(s), under exclusive licence to Springer Nature Switzerland AG.

Entities:  

Keywords:  Adaptation; RNA-seq; Retrotransposon; Transcriptome

Mesh:

Substances:

Year:  2021        PMID: 34383169     DOI: 10.1007/s10709-021-00130-w

Source DB:  PubMed          Journal:  Genetica        ISSN: 0016-6707            Impact factor:   1.082


  45 in total

Review 1.  Eukaryotic transposable elements and genome evolution.

Authors:  D J Finnegan
Journal:  Trends Genet       Date:  1989-04       Impact factor: 11.639

Review 2.  The impact of transposable elements in environmental adaptation.

Authors:  Elena Casacuberta; Josefa González
Journal:  Mol Ecol       Date:  2013-01-07       Impact factor: 6.185

3.  Differential gene expression to an LPS challenge in relation to exogenous corticosterone in the invasive cane toad (Rhinella marina).

Authors:  Steven Gardner; Vania Regina Assis; Honggang Zhao; Fernando Ribeiro Gomes; Eric Peatman; Mary T Mendonça
Journal:  Dev Comp Immunol       Date:  2018-07-17       Impact factor: 3.636

4.  High-throughput sequencing of transposable element insertions suggests adaptive evolution of the invasive Asian tiger mosquito towards temperate environments.

Authors:  Clement Goubert; Helene Henri; Guillaume Minard; Claire Valiente Moro; Patrick Mavingui; Cristina Vieira; Matthieu Boulesteix
Journal:  Mol Ecol       Date:  2017-06-27       Impact factor: 6.185

5.  MITE-Hunter: a program for discovering miniature inverted-repeat transposable elements from genomic sequences.

Authors:  Yujun Han; Susan R Wessler
Journal:  Nucleic Acids Res       Date:  2010-09-29       Impact factor: 16.971

6.  Considering transposable element diversification in de novo annotation approaches.

Authors:  Timothée Flutre; Elodie Duprat; Catherine Feuillet; Hadi Quesneville
Journal:  PLoS One       Date:  2011-01-31       Impact factor: 3.240

7.  A transposable element annotation pipeline and expression analysis reveal potentially active elements in the microalga Tisochrysis lutea.

Authors:  Jérémy Berthelier; Nathalie Casse; Nicolas Daccord; Véronique Jamilloux; Bruno Saint-Jean; Grégory Carrier
Journal:  BMC Genomics       Date:  2018-05-22       Impact factor: 3.969

8.  Identifying transposable element expression dynamics and heterogeneity during development at the single-cell level with a processing pipeline scTE.

Authors:  Jiangping He; Isaac A Babarinde; Li Sun; Shuyang Xu; Ruhai Chen; Junjie Shi; Yuanjie Wei; Yuhao Li; Gang Ma; Qiang Zhuang; Andrew P Hutchins; Jiekai Chen
Journal:  Nat Commun       Date:  2021-03-05       Impact factor: 14.919

9.  Endonuclease-containing Penelope retrotransposons in the bdelloid rotifer Adineta vaga exhibit unusual structural features and play a role in expansion of host gene families.

Authors:  Irina R Arkhipova; Irina A Yushenova; Fernando Rodriguez
Journal:  Mob DNA       Date:  2013-08-27

10.  Draft genome assembly of the invasive cane toad, Rhinella marina.

Authors:  Richard J Edwards; Daniel Enosi Tuipulotu; Timothy G Amos; Denis O'Meally; Mark F Richardson; Tonia L Russell; Marcelo Vallinoto; Miguel Carneiro; Nuno Ferrand; Marc R Wilkins; Fernando Sequeira; Lee A Rollins; Edward C Holmes; Richard Shine; Peter A White
Journal:  Gigascience       Date:  2018-09-01       Impact factor: 6.524

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