Literature DB >> 34378109

Bidirectional promoters: an enigmatic genome architecture and their roles in cancers.

Sheikh Shafin Ahmad1, Nure Sharaf Nower Samia1, Auroni Semonti Khan2, Rafeed Rahman Turjya1, Md Abdullah-Al-Kamran Khan3.   

Abstract

Bidirectional promoters are the transcription regulatory regions of genes positioned head-to-head on opposite strands. Specific sequence signals, chromatin modifications and three-dimensional structures of the transcription site facilitate the unconventional yet tightly regulated transcription proceeding in both directions from these promoters. Mutations or aberrant epigenetic changes can lead to abnormal enhanced or reduced expression from either of the bidirectionally transcribed genes resulting in tumorigenesis. Moreover, bidirectionally transcribed genes might also contribute towards the immune regulation in tumor microenvironment. In this review, we aimed to expound the characteristic features of bidirectional promoters alongside their transcriptional regulations, and ultimately, the association of these enigmatic genomic elements in different cancers.
© 2021. The Author(s), under exclusive licence to Springer Nature B.V.

Entities:  

Keywords:  Bidirectional promoter; Bidirectional transcription; Cancers; Epigenetic regulation

Mesh:

Year:  2021        PMID: 34378109     DOI: 10.1007/s11033-021-06612-6

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  55 in total

1.  The role of DNA methylation in mammalian epigenetics.

Authors:  P A Jones; D Takai
Journal:  Science       Date:  2001-08-10       Impact factor: 47.728

Review 2.  Gene silencing in cancer in association with promoter hypermethylation.

Authors:  James G Herman; Stephen B Baylin
Journal:  N Engl J Med       Date:  2003-11-20       Impact factor: 91.245

3.  Bidirectional gene organization: a common architectural feature of the human genome.

Authors:  Noritaka Adachi; Michael R Lieber
Journal:  Cell       Date:  2002-06-28       Impact factor: 41.582

4.  Chromatin remodeling around nucleosome-free regions leads to repression of noncoding RNA transcription.

Authors:  Adam N Yadon; Daniel Van de Mark; Ryan Basom; Jeffrey Delrow; Iestyn Whitehouse; Toshio Tsukiyama
Journal:  Mol Cell Biol       Date:  2010-08-30       Impact factor: 4.272

5.  Chromatin remodelling at promoters suppresses antisense transcription.

Authors:  Iestyn Whitehouse; Oliver J Rando; Jeff Delrow; Toshio Tsukiyama
Journal:  Nature       Date:  2007-12-13       Impact factor: 49.962

Review 6.  The dual lives of bidirectional promoters.

Authors:  Clay Wakano; Jung S Byun; Li-Jun Di; Kevin Gardner
Journal:  Biochim Biophys Acta       Date:  2012-02-21

7.  Genome-wide analysis of mammalian promoter architecture and evolution.

Authors:  Piero Carninci; Albin Sandelin; Boris Lenhard; Shintaro Katayama; Kazuro Shimokawa; Jasmina Ponjavic; Colin A M Semple; Martin S Taylor; Pär G Engström; Martin C Frith; Alistair R R Forrest; Wynand B Alkema; Sin Lam Tan; Charles Plessy; Rimantas Kodzius; Timothy Ravasi; Takeya Kasukawa; Shiro Fukuda; Mutsumi Kanamori-Katayama; Yayoi Kitazume; Hideya Kawaji; Chikatoshi Kai; Mari Nakamura; Hideaki Konno; Kenji Nakano; Salim Mottagui-Tabar; Peter Arner; Alessandra Chesi; Stefano Gustincich; Francesca Persichetti; Harukazu Suzuki; Sean M Grimmond; Christine A Wells; Valerio Orlando; Claes Wahlestedt; Edison T Liu; Matthias Harbers; Jun Kawai; Vladimir B Bajic; David A Hume; Yoshihide Hayashizaki
Journal:  Nat Genet       Date:  2006-04-28       Impact factor: 38.330

Review 8.  How eukaryotic genes are transcribed.

Authors:  Bryan J Venters; B Franklin Pugh
Journal:  Crit Rev Biochem Mol Biol       Date:  2009-06       Impact factor: 8.250

9.  An abundance of bidirectional promoters in the human genome.

Authors:  Nathan D Trinklein; Shelley Force Aldred; Sara J Hartman; Diane I Schroeder; Robert P Otillar; Richard M Myers
Journal:  Genome Res       Date:  2004-01       Impact factor: 9.043

Review 10.  Recent advances in research on multistage tumorigenesis.

Authors:  A Compagni; G Christofori
Journal:  Br J Cancer       Date:  2000-07       Impact factor: 7.640

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