Literature DB >> 34375713

Near-infrared and far-red genetically encoded indicators of neuronal activity.

Daria M Shcherbakova1.   

Abstract

Genetically encoded fluorescent indicators of neuronal activity are ultimately developed to dissect functions of neuronal ensembles during behavior in living animals. Recent development of near-infrared shifted calcium and voltage indicators moved us closer to this goal and enabled crosstalk-free combination with blue light-controlled optogenetic tools for all-optical control and readout. Here I discuss designs of recent near-infrared and far-red calcium and voltage indicators, compare their properties and performance, and overview their applications to spectral multiplexing and in vivo imaging. I also provide perspectives for further development.
Copyright © 2021 The Authors. Published by Elsevier B.V. All rights reserved.

Entities:  

Keywords:  All-optical electrophysiology; Calcium indicator; Far-red; GECI; GECO; GEVI; Near-infrared; Optogenetics; SomArchon; Voltage indicator; iGECI; miRFP

Mesh:

Substances:

Year:  2021        PMID: 34375713      PMCID: PMC8403644          DOI: 10.1016/j.jneumeth.2021.109314

Source DB:  PubMed          Journal:  J Neurosci Methods        ISSN: 0165-0270            Impact factor:   2.987


  77 in total

Review 1.  In vivo near-infrared fluorescence imaging.

Authors:  John V Frangioni
Journal:  Curr Opin Chem Biol       Date:  2003-10       Impact factor: 8.822

2.  Synthesis of Janelia Fluor HaloTag and SNAP-Tag Ligands and Their Use in Cellular Imaging Experiments.

Authors:  Jonathan B Grimm; Timothy A Brown; Brian P English; Timothée Lionnet; Luke D Lavis
Journal:  Methods Mol Biol       Date:  2017

Review 3.  The evolving capabilities of rhodopsin-based genetically encoded voltage indicators.

Authors:  Yiyang Gong
Journal:  Curr Opin Chem Biol       Date:  2015-07-02       Impact factor: 8.822

Review 4.  Visualizing and Manipulating Biological Processes by Using HaloTag and SNAP-Tag Technologies.

Authors:  Conner A Hoelzel; Xin Zhang
Journal:  Chembiochem       Date:  2020-04-02       Impact factor: 3.164

5.  A genetically encoded fluorescent sensor for in vivo imaging of GABA.

Authors:  Jonathan S Marvin; Yoshiteru Shimoda; Vincent Magloire; Marco Leite; Takashi Kawashima; Thomas P Jensen; Ilya Kolb; Erika L Knott; Ondrej Novak; Kaspar Podgorski; Nancy J Leidenheimer; Dmitri A Rusakov; Misha B Ahrens; Dimitri M Kullmann; Loren L Looger
Journal:  Nat Methods       Date:  2019-07-15       Impact factor: 28.547

Review 6.  Optical voltage imaging in neurons: moving from technology development to practical tool.

Authors:  Thomas Knöpfel; Chenchen Song
Journal:  Nat Rev Neurosci       Date:  2019-11-08       Impact factor: 34.870

7.  Voltage imaging and optogenetics reveal behaviour-dependent changes in hippocampal dynamics.

Authors:  Yoav Adam; Jeong J Kim; Shan Lou; Yongxin Zhao; Michael E Xie; Daan Brinks; Hao Wu; Mohammed A Mostajo-Radji; Simon Kheifets; Vicente Parot; Selmaan Chettih; Katherine J Williams; Benjamin Gmeiner; Samouil L Farhi; Linda Madisen; E Kelly Buchanan; Ian Kinsella; Ding Zhou; Liam Paninski; Christopher D Harvey; Hongkui Zeng; Paola Arlotta; Robert E Campbell; Adam E Cohen
Journal:  Nature       Date:  2019-05-01       Impact factor: 49.962

8.  Ultrafast Two-Photon Imaging of a High-Gain Voltage Indicator in Awake Behaving Mice.

Authors:  Vincent Villette; Mariya Chavarha; Ivan K Dimov; Jonathan Bradley; Lagnajeet Pradhan; Benjamin Mathieu; Stephen W Evans; Simon Chamberland; Dongqing Shi; Renzhi Yang; Benjamin B Kim; Annick Ayon; Abdelali Jalil; François St-Pierre; Mark J Schnitzer; Guoqiang Bi; Katalin Toth; Jun Ding; Stéphane Dieudonné; Michael Z Lin
Journal:  Cell       Date:  2019-12-12       Impact factor: 41.582

9.  Minimal domain of bacterial phytochrome required for chromophore binding and fluorescence.

Authors:  Konstantin A Rumyantsev; Daria M Shcherbakova; Natalia I Zakharova; Alexander V Emelyanov; Konstantin K Turoverov; Vladislav V Verkhusha
Journal:  Sci Rep       Date:  2015-12-18       Impact factor: 4.379

10.  A near-infrared genetically encoded calcium indicator for in vivo imaging.

Authors:  Anton A Shemetov; Mikhail V Monakhov; Qinrong Zhang; Jose Ernesto Canton-Josh; Manish Kumar; Maomao Chen; Mikhail E Matlashov; Xuan Li; Wei Yang; Liming Nie; Daria M Shcherbakova; Yevgenia Kozorovitskiy; Junjie Yao; Na Ji; Vladislav V Verkhusha
Journal:  Nat Biotechnol       Date:  2020-10-26       Impact factor: 54.908

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  5 in total

1.  Design and Initial Characterization of a Small Near-Infrared Fluorescent Calcium Indicator.

Authors:  Mikhail E Matlashov; Jorge Vera; Ludmila A Kasatkina; Kamran Khodakhah; Vladislav V Verkhusha
Journal:  Front Cell Dev Biol       Date:  2022-06-29

Review 2.  'Channeling' therapeutic discovery for epileptic encephalopathy through iPSC technologies.

Authors:  Dina Simkin; Christina Ambrosi; Kelly A Marshall; Luis A Williams; Jordyn Eisenberg; Mennat Gharib; Graham T Dempsey; Alfred L George; Owen B McManus; Evangelos Kiskinis
Journal:  Trends Pharmacol Sci       Date:  2022-05       Impact factor: 17.638

3.  Optogenetic manipulation and photoacoustic imaging using a near-infrared transgenic mouse model.

Authors:  Ludmila A Kasatkina; Chenshuo Ma; Mikhail E Matlashov; Tri Vu; Mucong Li; Andrii A Kaberniuk; Junjie Yao; Vladislav V Verkhusha
Journal:  Nat Commun       Date:  2022-05-19       Impact factor: 17.694

4.  Computing hemodynamic response functions from concurrent spectral fiber-photometry and fMRI data.

Authors:  Tzu-Hao H Chao; Wei-Ting Zhang; Li-Ming Hsu; Domenic H Cerri; Tzu-Wen Wang; Yen-Yu I Shih
Journal:  Neurophotonics       Date:  2022-01-05       Impact factor: 4.212

5.  Spectral fiber photometry derives hemoglobin concentration changes for accurate measurement of fluorescent sensor activity.

Authors:  Wei-Ting Zhang; Tzu-Hao Harry Chao; Yue Yang; Tzu-Wen Wang; Sung-Ho Lee; Esteban A Oyarzabal; Jingheng Zhou; Randy Nonneman; Nicolas C Pegard; Hongtu Zhu; Guohong Cui; Yen-Yu Ian Shih
Journal:  Cell Rep Methods       Date:  2022-06-29
  5 in total

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