| Literature DB >> 34375303 |
Chao-Ling Yao1,2,3, Poyin Huang4,5,6,7, Tsai-Chi Liu8, Yung-Kai Lin9,10, Ching-Yun Chen8, Yi-Ting Lai2, Tzu Yun Chin8, Tsung-Yu Tseng3, Yi-Chiung Hsu8.
Abstract
To date, different experimental strategies have been developed for the ex vivo expansion of human hematopoietic stem cells (HSCs) for clinical applications. However, differences in the genomic function of expanded HSCs under different culture systems remain unclear. In this study, we compared the gene expression profiles of HSCs in ex vivo expanded serum (10% FBS, fetal bovine serum) and serum-free culture systems and analyzed the molecular functions of differentially expressed genes using microarray chips. We identified 839 differentially expressed genes between the two culture systems. These genes were enriched in the TNF -regulated inflammatory pathway in an FBS culture system. In addition, the mRNA expression of CCL2 (C-C motif chemokine ligand 2), TNF (tumor necrosis factor) and FOS (FBJ murine osteosarcoma viral oncogene homolog) was validated by RT-qPCR. Our data revealed that ex vivo expansion of HSCs using the FBS culture system induces an inflammatory response and high CD38 expression, indicating that this system might activate an inflammatory pathway and induce expression of the cancer marker CD38 during ex vivo expansion of HSCs. This study provides a transcriptional profile and new insights into the genomic functions of HSCs under different expanded cultures.Entities:
Keywords: CD38; cord blood; hematopoietic stem cells; inflammation; microarray
Mesh:
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Year: 2021 PMID: 34375303 PMCID: PMC8386547 DOI: 10.18632/aging.203398
Source DB: PubMed Journal: Aging (Albany NY) ISSN: 1945-4589 Impact factor: 5.682
Figure 1Experimental procedure for the gene microarray analysis of human HSCs expanded under different culture systems.
Figure 2Identify CD34 and CD38 expression by flow cytometry after HSCs cultured for 7 days. (A) The isolated HSC (CD34+/CD38–) were examined by flow cytometry with SSC-conjugated anti-CD34 and FSC-conjugated anti-CD38. Non-stained HSCs are used to determine the background auto-fluorescence to set the negative population allowing cells stained with CD38 and CD34 to be visualized (right side). The percentage of surface marker-positive cells in the population is indicated. (B) Flow cytometry expression of CD34 and CD38 on hematopoietic stem cells. Comparison of mean fluorescence intensity (MFI) of CD34 and CD38 in serum-expanded (DAY7-FBS) vs. serum-free-expanded (DAY7-SF) HSCs.
Hematopoietic stem cell surface markers expression under different culture systems.
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| 16965268 | 7.7 | 5.47 | 4.67 | 4.01E-06 | CD38 | CD38 Molecule | |
| 16698801 | 7.06 | 8.55 | –2.81 | 1.53E-05 | CD34 | CD34 Molecule | |
| 16974534 | 6.06 | 7.66 | –3.03 | 1.48E-05 | PROM1 | Prominin 1 | CD133 |
| 16903140 | 9.72 | 9.22 | 1.41 | 0.0029 | CXCR4 | Chemokine (C-X-C motif receptor 4) | |
| 16745366 | 3.7 | 3.74 | –1.03 | 0.8263 | THY1 | Thy-1 cell surface antigen | CD90 |
| 16966855 | 9.16 | 9.61 | –1.36 | 0.0033 | KIT | v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog | c-Kit |
| 16675578 | 9.47 | 8.62 | 1.8 | 0.0002 | PTPRC | Protein tyrosine phosphatase, receptor type, C | CD45RA |
Figure 3Differentially expressed genes in culture system with or without serum. (A) Hierarchical cluster showing the genes differentially expressed between the two groups. Significant genes (fold change of 2.0 and p < 0.05.) are shown in the heatmap. (B) The volcano plot shows 839 genes differentially expressed (578 genes upregulated (red) and 261 downregulated (green) in serum condition).
Figure 4Pathway analysis of differentially expressed genes in serum and serum-free culture systems. (A) The list of candidate genes from 14 overlapping pathways between Wiki pathway and KEGG pathway. (B) Network analysis with cytoscape in 56 candidate genes in the 14 overlapping pathways.
Figure 5(A) RT-qPCR analysis for mRNA expression of CCL2, TNFα, and FOS in serum and serum-free cultured hematopoietic stem cells. Quantification of gene expression normalized with respect to GAPDH. (n = 3, data are expressed as means ± SD. *p < 0.05 versus serum free condition). (B) Western blot analysis for protein expression of CCL2, TNFα, and FOS in serum and serum-free cultured hematopoietic stem cells. GADPH was used as a loading control.
Other blood cells CD markers expression from HSCs microarray results.
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| CD14* | CD14 | 17000793 | 7.17 | 3.88 | 9.8 | 0.00000343 | CD14 Molecule |
| CD16 | FCGR3A | 16695700 | 2.62 | 2.66 | –1.03 | 0.83 | Fc fragment of IgG, low affinity llla, receptor (CD16a) |
| FCGR3B | 16695715 | 1.5 | 1.67 | –1.3 | 0.5408 | Fc fragment of IgG, low affinity lllb, receptor (CD16b) | |
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| CD56 | NCAM1 | 16731297 | 2.31 | 2.43 | –1.09 | 0.2209 | Neutral cell adhesion molecule 1 |
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| CD3 | CD3D | 16745016 | 2.03 | 2.16 | –1.1 | 0.336 | CD3d molecule, delta (CD3-TCR complex) |
| CD3E | 16731795 | 2.65 | 2.51 | 1.11 | 0.16 | CD3e molecule, epsilon (CD3-TCR complex) | |
| CD3G | 16731806 | 2.54 | 2.53 | 1.01 | 0.9389 | CD3g molecule, gamma (CD3-TCR complex) | |
| CD4* | CD4 | 16747417 | 6.66 | 5.09 | 2.99 | 0.0000478 | CD4 molecule |
| CD8 | CD8A | 16899928 | 3.92 | 3.74 | 1.13 | 0.1165 | CD8a molecule |
Figure 6The proposed model of CCL2 involved HSCs ex vivo expanded culture systems.