Literature DB >> 34374542

Curvature of the Retroviral Capsid Assembly Is Modulated by a Molecular Switch.

Tyrone Thames1, Alexander J Bryer2, Xin Qiao1, Jaekyun Jeon3, Ryan Weed4, Kaylie Janicki4, Bingwen Hu5, Peter L Gor'kov6, Ivan Hung6, Zhehong Gan6, Juan R Perilla2, Bo Chen1.   

Abstract

During the maturation step, the retroviral capsid proteins (CAs) assemble into polymorphic capsids. Their acute curvature is largely determined by 12 pentamers inserted into the hexameric lattice. However, how the CA switches its conformation to control assembly curvature remains unclear. We report the high-resolution structural model of the Rous sarcoma virus (RSV) CA T = 1 capsid, established by molecular dynamics simulations combining solid-state NMR and prior cryoelectron tomography restraints. Comparing this with our previous model of the RSV CA tubular assembly, we identify the key residues for dictating the incorporation of acute curvatures. These residues undergo large torsion angle changes, resulting in a 34° rotation of the C-terminal domain relative to its N-terminal domain around the flexible interdomain linker, without substantial changes of either the conformation of individual domains or the assembly contact interfaces. This knowledge provides new insights to help decipher the mechanism of the retroviral capsid assembly.

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Year:  2021        PMID: 34374542      PMCID: PMC9083439          DOI: 10.1021/acs.jpclett.1c01769

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.888


  45 in total

1.  Structures of the HIV-1 capsid protein dimerization domain at 2.6 A resolution.

Authors:  D K Worthylake; H Wang; S Yoo; W I Sundquist; C P Hill
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-01-01

2.  A structural model for the generation of continuous curvature on the surface of a retroviral capsid.

Authors:  Graham D Bailey; Jae-Kyung Hyun; Alok K Mitra; Richard L Kingston
Journal:  J Mol Biol       Date:  2012-01-27       Impact factor: 5.469

3.  A two-pronged structural analysis of retroviral maturation indicates that core formation proceeds by a disassembly-reassembly pathway rather than a displacive transition.

Authors:  Paul W Keller; Rick K Huang; Matthew R England; Kayoko Waki; Naiqian Cheng; J Bernard Heymann; Rebecca C Craven; Eric O Freed; Alasdair C Steven
Journal:  J Virol       Date:  2013-10-09       Impact factor: 5.103

4.  Atomic Resolution Structure of Monomorphic Aβ42 Amyloid Fibrils.

Authors:  Michael T Colvin; Robert Silvers; Qing Zhe Ni; Thach V Can; Ivan Sergeyev; Melanie Rosay; Kevin J Donovan; Brian Michael; Joseph Wall; Sara Linse; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2016-07-14       Impact factor: 15.419

5.  Crystal structure of human cyclophilin A bound to the amino-terminal domain of HIV-1 capsid.

Authors:  T R Gamble; F F Vajdos; S Yoo; D K Worthylake; M Houseweart; W I Sundquist; C P Hill
Journal:  Cell       Date:  1996-12-27       Impact factor: 41.582

6.  Proton-driven assembly of the Rous Sarcoma virus capsid protein results in the formation of icosahedral particles.

Authors:  Jae-Kyung Hyun; Mazdak Radjainia; Richard L Kingston; Alok K Mitra
Journal:  J Biol Chem       Date:  2010-03-12       Impact factor: 5.157

7.  Structure of the amino-terminal core domain of the HIV-1 capsid protein.

Authors:  R K Gitti; B M Lee; J Walker; M F Summers; S Yoo; W I Sundquist
Journal:  Science       Date:  1996-07-12       Impact factor: 47.728

8.  Assembly and analysis of conical models for the HIV-1 core.

Authors:  B K Ganser; S Li; V Y Klishko; J T Finch; W I Sundquist
Journal:  Science       Date:  1999-01-01       Impact factor: 47.728

9.  Protein backbone and sidechain torsion angles predicted from NMR chemical shifts using artificial neural networks.

Authors:  Yang Shen; Ad Bax
Journal:  J Biomol NMR       Date:  2013-06-02       Impact factor: 2.835

10.  Clinical targeting of HIV capsid protein with a long-acting small molecule.

Authors:  John O Link; Martin S Rhee; Winston C Tse; Jim Zheng; John R Somoza; William Rowe; Rebecca Begley; Anna Chiu; Andrew Mulato; Derek Hansen; Eric Singer; Luong K Tsai; Rujuta A Bam; Chien-Hung Chou; Eda Canales; Gediminas Brizgys; Jennifer R Zhang; Jiayao Li; Michael Graupe; Philip Morganelli; Qi Liu; Qiaoyin Wu; Randall L Halcomb; Roland D Saito; Scott D Schroeder; Scott E Lazerwith; Steven Bondy; Debi Jin; Magdeleine Hung; Nikolai Novikov; Xiaohong Liu; Armando G Villaseñor; Carina E Cannizzaro; Eric Y Hu; Robert L Anderson; Todd C Appleby; Bing Lu; Judy Mwangi; Albert Liclican; Anita Niedziela-Majka; Giuseppe A Papalia; Melanie H Wong; Stephanie A Leavitt; Yili Xu; David Koditek; George J Stepan; Helen Yu; Nikos Pagratis; Sheila Clancy; Shekeba Ahmadyar; Terrence Z Cai; Scott Sellers; Scott A Wolckenhauer; John Ling; Christian Callebaut; Nicolas Margot; Renee R Ram; Ya-Pei Liu; Rob Hyland; Gary I Sinclair; Peter J Ruane; Gordon E Crofoot; Cheryl K McDonald; Diana M Brainard; Latesh Lad; Swami Swaminathan; Wesley I Sundquist; Roman Sakowicz; Anne E Chester; William E Lee; Eric S Daar; Stephen R Yant; Tomas Cihlar
Journal:  Nature       Date:  2020-07-01       Impact factor: 49.962

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  1 in total

Review 1.  Molecular dynamics of the viral life cycle: progress and prospects.

Authors:  Peter Eugene Jones; Carolina Pérez-Segura; Alexander J Bryer; Juan R Perilla; Jodi A Hadden-Perilla
Journal:  Curr Opin Virol       Date:  2021-08-28       Impact factor: 7.121

  1 in total

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