Literature DB >> 34373560

Hyperspectral data as a biodiversity screening tool can differentiate among diverse Neotropical fishes.

M A Kolmann1,2, M Kalacska3, O Lucanus4, L Sousa5, D Wainwright6, J P Arroyo-Mora7, M C Andrade8.   

Abstract

Hyperspectral data encode information from electromagnetic radiation (i.e., color) of any object in the form of a spectral signature; these data can then be used to distinguish among materials or even map whole landscapes. Although hyperspectral data have been mostly used to study landscape ecology, floral diversity and many other applications in the natural sciences, we propose that spectral signatures can be used for rapid assessment of faunal biodiversity, akin to DNA barcoding and metabarcoding. We demonstrate that spectral signatures of individual, live fish specimens can accurately capture species and clade-level differences in fish coloration, specifically among piranhas and pacus (Family Serrasalmidae), fishes with a long history of taxonomic confusion. We analyzed 47 serrasalmid species and could distinguish spectra among different species and clades, with the method sensitive enough to document changes in fish coloration over ontogeny. Herbivorous pacu spectra were more like one another than they were to piranhas; however, our method also documented interspecific variation in pacus that corresponds to cryptic lineages. While spectra do not serve as an alternative to the collection of curated specimens, hyperspectral data of fishes in the field should help clarify which specimens might be unique or undescribed, complementing existing molecular and morphological techniques.
© 2021. The Author(s).

Entities:  

Year:  2021        PMID: 34373560     DOI: 10.1038/s41598-021-95713-0

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  17 in total

1.  Optical properties of several Pacific fishes.

Authors:  J H Churnside; P A McGillivary
Journal:  Appl Opt       Date:  1991-07-20       Impact factor: 1.980

2.  DEVELOPMENT AND ENVIRONMENT. Balancing hydropower and biodiversity in the Amazon, Congo, and Mekong.

Authors:  K O Winemiller; P B McIntyre; L Castello; E Fluet-Chouinard; T Giarrizzo; S Nam; I G Baird; W Darwall; N K Lujan; I Harrison; M L J Stiassny; R A M Silvano; D B Fitzgerald; F M Pelicice; A A Agostinho; L C Gomes; J S Albert; E Baran; M Petrere; C Zarfl; M Mulligan; J P Sullivan; C C Arantes; L M Sousa; A A Koning; D J Hoeinghaus; M Sabaj; J G Lundberg; J Armbruster; M L Thieme; P Petry; J Zuanon; G Torrente Vilara; J Snoeks; C Ou; W Rainboth; C S Pavanelli; A Akama; A van Soesbergen; L Sáenz
Journal:  Science       Date:  2016-01-08       Impact factor: 47.728

3.  Range retractions and extinction in the face of climate warming.

Authors:  Chris D Thomas; Aldina M A Franco; Jane K Hill
Journal:  Trends Ecol Evol       Date:  2006-06-06       Impact factor: 17.712

4.  Hyperspectral imaging of cuttlefish camouflage indicates good color match in the eyes of fish predators.

Authors:  Chuan-Chin Chiao; J Kenneth Wickiser; Justine J Allen; Brock Genter; Roger T Hanlon
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-16       Impact factor: 11.205

5.  Infrared reflectance in leaf-sitting neotropical frogs.

Authors:  P A Schwalm; P H Starrett; R W McDiarmid
Journal:  Science       Date:  1977-06-10       Impact factor: 47.728

6.  Spectral sensitivity in ray-finned fishes: diversity, ecology and shared descent.

Authors:  Lorian E Schweikert; Robert R Fitak; Eleanor M Caves; Tracey T Sutton; Sönke Johnsen
Journal:  J Exp Biol       Date:  2018-11-27       Impact factor: 3.312

7.  Widespread amphibian extinctions from epidemic disease driven by global warming.

Authors:  J Alan Pounds; Martín R Bustamante; Luis A Coloma; Jamie A Consuegra; Michael P L Fogden; Pru N Foster; Enrique La Marca; Karen L Masters; Andrés Merino-Viteri; Robert Puschendorf; Santiago R Ron; G Arturo Sánchez-Azofeifa; Christopher J Still; Bruce E Young
Journal:  Nature       Date:  2006-01-12       Impact factor: 49.962

8.  Operational Tree Species Mapping in a Diverse Tropical Forest with Airborne Imaging Spectroscopy.

Authors:  Claire A Baldeck; Gregory P Asner; Robin E Martin; Christopher B Anderson; David E Knapp; James R Kellner; S Joseph Wright
Journal:  PLoS One       Date:  2015-07-08       Impact factor: 3.240

9.  Non-invasive measurement of frog skin reflectivity in high spatial resolution using a dual hyperspectral approach.

Authors:  Francisco Pinto; Michael Mielewczik; Frank Liebisch; Achim Walter; Hartmut Greven; Uwe Rascher
Journal:  PLoS One       Date:  2013-09-18       Impact factor: 3.240

10.  Changeable camouflage: how well can flounder resemble the colour and spatial scale of substrates in their natural habitats?

Authors:  Derya Akkaynak; Liese A Siemann; Alexandra Barbosa; Lydia M Mäthger
Journal:  R Soc Open Sci       Date:  2017-03-08       Impact factor: 2.963

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