| Literature DB >> 34368507 |
Amy R Kontorovich1,2, Nihir Patel2,3, Arden Moscati4, Felix Richter2, Inga Peter3, Enkhsaikhan Purevjav5, Simina Ramona Selejan6, Ingrid Kindermann6, Jeffrey A Towbin5, Michael Bohm6, Karin Klingel7, Bruce D Gelb2,3,8.
Abstract
Impairments in certain cardiac genes confer risk for myocarditis in children. To determine the extent of this association, we performed genomic sequencing in predominantly adult patients with acute myocarditis and matched control subjects. Putatively deleterious variants in a broad set of cardiac genes were found in 19 of 117 acute myocarditis cases vs 34 of 468 control subjects (P = 0.003). Thirteen genes classically associated with cardiomyopathy or neuromuscular disorders with cardiac involvement were implicated, including >1 associated damaging variant in DYSF, DSP, and TTN. Phenotypes of subjects who have acute myocarditis with or without deleterious variants were similar, indicating that genetic testing is necessary to differentiate them.Entities:
Keywords: ACM, arrhythmogenic cardiomyopathy; AM, acute myocarditis; AM1, acute myocarditis registry 1; CMP, cardiomyopathy; DV, deleterious variant; EF, ejection fraction; ES, exome sequencing; NMD, neuromuscular disorder; OR, odds ratio; TGP, targeted gene panel; acute myocarditis; cardiomyopathy; genetics
Year: 2021 PMID: 34368507 PMCID: PMC8326270 DOI: 10.1016/j.jacbts.2021.06.001
Source DB: PubMed Journal: JACC Basic Transl Sci ISSN: 2452-302X
Patient Demographics
| AM1 (N = 26) | AM2 (N = 72) | AM3 (N = 19) | |
|---|---|---|---|
| Age, y | 38.5 (1.1-78) | 44.5 (18-66) | 40 (17-69) |
| Pediatric | 8 (30.8) | 3 (4.2) | 2 (10.5) |
| Female | 11 (42.3) | 23 (31.9) | 3 (15.8) |
| Self-reported race | |||
| European/Caucasian | 21 (80.8) | 71 (98.6) | 19 (100.0) |
| African/African American | 2 (7.7) | 0 (0.0) | 0 (0.0) |
| Hispanic | 3 (11.5) | 0 (0.0) | 0 (0.0) |
| East Asian | 0 | 0 | 0 |
| South Asian | 0 | 0 | 0 |
| Middle Eastern | 0 (0.0) | 1 (1.4) | 0 (0.0) |
Values are median (range) or n (%).
AM1 = acute myocarditis registry 1.
Putatively Damaging Variants in Subjects With AM
| Registry | Case | Age (y) | Sex | Gene | cDNA Change | Function | ClinVar | gnomAD AF | hg38 Coordinates |
|---|---|---|---|---|---|---|---|---|---|
| AM1 | |||||||||
| AM1-1 | 0.6 | F | c.420delG | Frameshift deletion | – | – | 3244118 | ||
| AM1-1 | 0.6 | F | c.3697dupA | Frameshift insertion | – | – | 7579886 | ||
| AM1-1 | 0.6 | F | c.1347dupC | Frameshift insertion | – | – | 10798496 | ||
| AM1-1 | 0.6 | F | c.823dupT | Frameshift insertion | – | – | 31180428 | ||
| AM1-2 | 13 | F | c.76806dupA | Frameshift insertion | – | – | 178533189 | ||
| AM1-2 | 13 | F | c.52867_52868insCA | Frameshift insertion | – | – | 178566645 | ||
| AM1-3 | 42 | F | c.G1589A | Nonsynonymous SNV | P/VUS | 5.3 · 10-5 | 38455463 | ||
| AM1-4 | 60 | M | c.4152dupC | Frameshift insertion | P | 2.8 · 10-5 | 71612666 | ||
| AM1-5 | 62 | M | c.C35680T | Stopgain | – | – | 178589426 | ||
| AM2 | |||||||||
| AM2-1 | 19 | F | c.C1234T | Stopgain | – | – | 7567874 | ||
| AM2-2 | 23 | M | c.1771delC | Frameshift deletion | P | – | 32822534 | ||
| AM2-3 | 31 | M | c.C5851T | Stopgain | P | – | 7583113 | ||
| AM2-4 | 40 | M | c.T581C | Nonsynonymous SNV | LP/P | 1.5 · 10-5 | 23320639 | ||
| AM2-5 | 44 | F | c.C2377T | Stopgain | VUS | – | 23425328 | ||
| AM2-6 | 48 | M | c.51250delA | Frameshift deletion | – | – | 178568262 | ||
| AM2-7 | 51 | M | c.7870delA | Frameshift deletion | – | – | 128858195 | ||
| AM2-8 | 54 | F | c.C760T | Nonsynonymous SNV | LP/P | 0.0001 | 71515716 | ||
| AM3 | |||||||||
| AM3-1 | 34 | M | c.C22552T | Stopgain | – | – | 178614226 | ||
| AM3-2 | 37 | M | c.50536delT | Frameshift deletion | – | – | 178568976 | ||
| AM3-3 | 39 | M | c.38004delA | Frameshift deletion | – | – | 178585120 | ||
| AM3-4 | 46 | M | c.38004delA | Frameshift deletion | – | – | 178585120 | ||
| AM3-5 | 57 | F | c.991+2T>A | Splicing | – | – | 123438942 | ||
| AM3-6 | 62 | M | c.G73T | Stopgain | – | 0 | 55146681 |
Dashes indicate that the information is not listed in the database. NM numbers for cDNA variants are as follows: PRDM, NM_022114; DSP, NM_004415; DNM2, NM_001005360; DMD, NM_004015; TTN, NM_133437; RYR1, NM_000540; PLEC, NM_201378; DYSF, NM_001130976; PKP2, NM_001005242; SGCG, NM_000231; MYH7, NM_000257; FLNC, NM_001127487; DYSF, NM_001130455; TRDN, NM_006073; TNNT1, NM_001126133.
AF = allele frequency; AM = acute myocarditis; cDNA = complementary DNA; gnomAD = genome Aggregation Database; LP = likely pathogenic; NM = neutrophil migration; SNV = single nucleotide variation; P = pathogenic; VUS = variant of uncertain significance.
Rates of Putatively Damaging Variants in AM Cohorts
| Registry | With DV | OR (95% CI) | ||
|---|---|---|---|---|
| AM Cases | Control Cases | |||
| AM1 | 5 (19.2) | 6 (5.6) | 4.05 (1.13-14.5) | 0.043 |
| AM2 | 8 (11.1) | 22 (7.6) | 1.51 (0.64-3.55) | 0.344 |
| AM3 | 6 (31.6) | 6 (7.9) | 5.38 (1.5-19.3) | 0.013 |
Values are n (%) unless otherwise indicated.
OR = odds ratio; other abbreviations as in Tables 1 and 2.
Figure 1Pooled Burden Analysis of Putatively DVs in Patients With AM
(A) A pooled burden analysis of deleterious variant (DV) burden in 3 acute myocarditis (AM) cohorts (AM1, AM2, AM3) identified a statistically significant enrichment of DVs in patients with AM compared with in control subjects (logistic regression odds ratio and 95% CI shown as red diamond; P = 0.003). (B) In a supporting analysis, 10,000 simulations of resampling with replacement within each study based on study sample size (gray) also identified a statistically significant DV burden in patients with AM (odds ratio: 2.48 shown as red line, 95% CI: 1.31-4.54; P = 0.004).
Figure 2AM Genes and Traditional Associated Phenotypes
The numbers1, 2, 3, and 8 indicate the DV frequencies. ACM = arrhythmogenic cardiomyopathy; AM = acute myocarditis; DCM = dilated cardiomyopathy; DV = deleterious variant; HCM = hypertrophic cardiomyopathy; NMD = neuromuscular disease.
Histologic AM Type
| Registry | AM Type | Lymphocytic | Giant Cell | Eosinophilic | Granulomatous |
|---|---|---|---|---|---|
| AM1 | DV+ | 5 (19.2) | – | – | – |
| DV− | 21 (80.8) | – | – | – | |
| Total | 26 (100.0) | – | |||
| AM2 | DV+ | 5 (7.0) | 1 (1.4) | – | 1 (1.4) |
| DV− | 37 (52.1) | 11 (15.5) | 13 (18.3) | 3 (4.2) | |
| Total | 42 (59.2) | 12 (16.9) | 13 (18.3) | 4 (5.6) | |
| AM3 | DV+ | 6 (31.6) | – | – | – |
| DV− | 13 (68.4) | – | – | – | |
| Total | 19 (100.0) |
Values are n (%).
Abbreviations as in Tables 1 and 2.
This does not include the DCM case that had AM years before; n = 71.
Results of Viral PCR on Myocardial Specimens From Subjects Who Were DV+ vs. DV− in AM1, AM2, and AM3
| Adenoviruses | HHV6 | Enteroviruses | Parvovirus B19 | Not Found | |
|---|---|---|---|---|---|
| DV+ | 0 | 1 | 2 | 5 | 11 |
| DV− | 10 | 5 | 6 | 13 | 65 |
| Total | 10 | 6 | 8 | 18 | 76 |
Values are n. One subject had both parvovirus B19 and HHV6 DNA in myocardium.
HHV6 = human herpesvirus 6; PCR = polymerase chain reaction; other abbreviations as in Table 1.