Literature DB >> 34366543

Automated detection and quantification of Wilms' Tumor 1-positive cells in murine diabetic kidney disease.

Darshana Govind1, Briana A Santo1, Brandon Ginley1, Rabi Yacoub2, Avi Z Rosenberg3, Kuang-Yu Jen4, Vignesh Walavalkar5, Gregory E Wilding6, Amber M Worral1, Imtiaz Mohammad1, Pinaki Sarder1.   

Abstract

In diabetic kidney disease (DKD), podocyte depletion, and the subsequent migration of parietal epithelial cells (PECs) to the tuft, is a precursor to progressive glomerular damage, but the limitations of brightfield microscopy currently preclude direct pathological quantitation of these cells. Here we present an automated approach to podocyte and PEC detection developed using kidney sections from mouse model emulating DKD, stained first for Wilms' Tumor 1 (WT1) (podocyte and PEC marker) by immunofluorescence, then post-stained with periodic acid-Schiff (PAS). A generative adversarial network (GAN)-based pipeline was used to translate these PAS-stained sections into WT1-labeled IF images, enabling in silico label-free podocyte and PEC identification in brightfield images. Our method detected WT1-positive cells with high sensitivity/specificity (0.87/0.92). Additionally, our algorithm performed with a higher Cohen's kappa (0.85) than the average manual identification by three renal pathologists (0.78). We propose that this pipeline will enable accurate detection of WT1-positive cells in research applications.

Entities:  

Keywords:  WT1-positive cell detection; deep learning; immunofluorescence; pix2pix GAN

Year:  2021        PMID: 34366543      PMCID: PMC8345331          DOI: 10.1117/12.2581387

Source DB:  PubMed          Journal:  Proc SPIE Int Soc Opt Eng        ISSN: 0277-786X


  10 in total

1.  Quantification of histochemical staining by color deconvolution.

Authors:  A C Ruifrok; D A Johnston
Journal:  Anal Quant Cytol Histol       Date:  2001-08       Impact factor: 0.302

2.  Weighted kappa: nominal scale agreement with provision for scaled disagreement or partial credit.

Authors:  J Cohen
Journal:  Psychol Bull       Date:  1968-10       Impact factor: 17.737

Review 3.  Podocytes: the Weakest Link in Diabetic Kidney Disease?

Authors:  Jamie S Lin; Katalin Susztak
Journal:  Curr Diab Rep       Date:  2016-05       Impact factor: 4.810

Review 4.  Podocyte injury and its consequences.

Authors:  Michio Nagata
Journal:  Kidney Int       Date:  2016-03-19       Impact factor: 10.612

5.  An integrated iterative annotation technique for easing neural network training in medical image analysis.

Authors:  Brendon Lutnick; Brandon Ginley; Darshana Govind; Sean D McGarry; Peter S LaViolette; Rabi Yacoub; Sanjay Jain; John E Tomaszewski; Kuang-Yu Jen; Pinaki Sarder
Journal:  Nat Mach Intell       Date:  2019-02-11

Review 6.  Rodent models of streptozotocin-induced diabetic nephropathy.

Authors:  Greg H Tesch; Terri J Allen
Journal:  Nephrology (Carlton)       Date:  2007-06       Impact factor: 2.506

7.  Recruitment of podocytes from glomerular parietal epithelial cells.

Authors:  Daniel Appel; David B Kershaw; Bart Smeets; Gang Yuan; Astrid Fuss; Björn Frye; Marlies Elger; Wilhelm Kriz; Jürgen Floege; Marcus J Moeller
Journal:  J Am Soc Nephrol       Date:  2008-12-17       Impact factor: 10.121

Review 8.  The role of podocytes in glomerular pathobiology.

Authors:  Katsuhiko Asanuma; Peter Mundel
Journal:  Clin Exp Nephrol       Date:  2003-12       Impact factor: 2.801

Review 9.  Understanding Bland Altman analysis.

Authors:  Davide Giavarina
Journal:  Biochem Med (Zagreb)       Date:  2015-06-05       Impact factor: 2.313

10.  Multi-radial LBP Features as a Tool for Rapid Glomerular Detection and Assessment in Whole Slide Histopathology Images.

Authors:  Olivier Simon; Rabi Yacoub; Sanjay Jain; John E Tomaszewski; Pinaki Sarder
Journal:  Sci Rep       Date:  2018-02-01       Impact factor: 4.379

  10 in total
  1 in total

1.  Evaluating tubulointerstitial compartments in renal biopsy specimens using a deep learning-based approach for classifying normal and abnormal tubules.

Authors:  Satoshi Hara; Emi Haneda; Masaki Kawakami; Kento Morita; Ryo Nishioka; Takeshi Zoshima; Mitsuhiro Kometani; Takashi Yoneda; Mitsuhiro Kawano; Shigehiro Karashima; Hidetaka Nambo
Journal:  PLoS One       Date:  2022-07-11       Impact factor: 3.752

  1 in total

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