| Literature DB >> 34355069 |
Shimaa E Soliman1, Naglaa S Elabd2, Salah M El-Kousy3, Mohamed F Awad4.
Abstract
BACKGROUND AND AIM: Gastric Cancer (GC) is a leading cause of morbidity and mortality worldwide, particularly in developing nations, only a few suitable gastric cancer serum biomarkers with acceptable sensitivity and specificity exist. This work aims to highlight and uncover miR-30a-5p and miR-182-5p's diagnostic roles regarding gastric cancer and their roles in predicting prognosis.Entities:
Keywords: Gastric cancer; RT-PCR; miR-182–5p; miR-30a-5p
Year: 2021 PMID: 34355069 PMCID: PMC8321916 DOI: 10.1016/j.bbrep.2021.101079
Source DB: PubMed Journal: Biochem Biophys Rep ISSN: 2405-5808
Fig. 1A: Amplification plot of miR-30a-5p expression (normalized fluorescence signal (ΔRn) plotted versus cycle number) B: Amplification plot of miR-182–5p expression (normalized fluorescence signal (ΔRn) plotted versus cycle number) C: Melting curve of miR-30a-5p expression D: Melting curve of miR-182–5p expression.
Comparison between the three studied groups according to demographic and laboratory data.
| Group I (n = 47) | Group II (n = 54) | Group III (n = 47) | Test of Sig. | p | Sig. Bet. Grps. | |||
|---|---|---|---|---|---|---|---|---|
| Sex | ||||||||
| Male | 31 (66%) | 32 (59.3%) | 32 (68.1%) | χ2= | 0.623 | – | – | – |
| Female | 16 (34%) | 22 (40.7%) | 15 (31.9%) | |||||
| Mean ± SD. | 60.9 ± 7.9 | 60.5 ± 6.3 | 57.6 ± 8.3 | F= | 0.063 | – | – | – |
| Median (Min. – Max.) | 60 (44–79) | 60.5 (49–73) | 58 (36–75) | |||||
| Mean ± SD. | 23.9 ± 4.9 | 26.5 ± 5.1 | 21.5 ± 1.9 | F= | <0.001* | 0.007* | 0.019* | <0.001* |
| Median (Min. – Max) | 23.2 (17.7–31) | 27.23 (18.6–38) | 21.6 (18.6–24.6) | |||||
| Mean ± SD | 7.9 ± 1.3 | 7.7 ± 1.2 | 7.3 ± 1.3 | F = 2.963 | 0.055 | – | – | – |
| Median (Min. – Max.) | 8 (4.9–10.1) | 8.1 (4.9–9.7) | 7.6 (4.9–9.8) | |||||
| Mean ± SD | 10.3 ± 2.1 | 10 ± 1.7 | 13.9 ± 1.2 | F= | <0.001* | 0.478 | <0.001* | <0.001* |
| Median (Min. – Max) | 10.4 (5.5–15) | 9.7 (4.5–14.2) | 13.8 (11.8–16.1) | |||||
| Mean ± SD | 294.2 ± 75.1 | 258.4 ± 79.1 | 255.5 ± 71.2 | F= | 0.022* | 0.048* | 0.036* | 0.979 |
| Median (Min. – Max.) | 289 (165–420) | 276 (155–421) | 258 (164–421) | |||||
| Mean ± SD. | 3.9 ± 0.3 | 4 ± 0.3 | 4 ± 0.5 | F = 1.841 | 0.162 | – | – | – |
| Median (Min. – Max). | 3.8 (3.5–4.3) | 3.9 (3.7–4.9) | 3.9 (3.5–5.7) | |||||
| Mean ± SD | 1 ± 0.2 | 1 ± 0.2 | 1 ± 0.2 | F = 0.107 | 0.898 | – | – | – |
| Median (Min. – Max.) | 0.9 (0.6–1.4) | 1 (0.6–1.3) | 1 (0.6–1.3) | |||||
| Mean ± SD | 29.2 ± 9 | 28.4 ± 6.9 | 25.8 ± 6.1 | F = 2.804 | 0.064 | – | – | – |
| Median (Min. – Max) | 31 (17–56) | 29 (18–50) | 27 (17–38) | |||||
| Mean ± SD. | 27.6 ± 5.5 | 26.9 ± 5.8 | 256 ± 5.9 | F = 2.494 | 0.086 | – | – | – |
| Median (Min. – Max.) | 28 (18–37) | 28 (18–35) | 27 (14–35) | |||||
| No | 37 (78.7%) | 20 (37%) | 47 (100%) | χ2= | <0.001* | <0.001* | 0.001* | <0.001* |
| Yes | 10 (21.3%) | 34 (63%) | 0 (0%) | |||||
| Mean ± SD | 56.91 ± 97.8 | 9.34 ± 7.40 | 6.38 ± 5.4 | H= | <0.001* | <0.001* | <0.001* | 0.055 |
| Median (Min. – Max) | 14.90 (3–575) | 5.10 (1.10–22) | 3.40 (0.80–13) | |||||
| Mean ± SD | 54.91 ± 31.9 | 15.43 ± 8.67 | 13.36 ± 7.4 | H= | <0.001* | <0.001* | <0.001* | 0.353 |
| Median (Min. – Max.) | 54 (7.5–112) | 16 (1–37) | 12 (2–29) | |||||
| Mean ± SD | 709 ± 32.17 | 10.81 ± 2.67 | 10.30 ± 2.96 | H= | <0.001* | <0.001* | <0.001* | 0.452 |
| Median (Min. – Max.) | 78 (10–110) | 11 (6–15) | 10 (5–17) | |||||
| Mean ± SD | 2.21 ± 0.83 | 7.96 ± 4.91 | 9.50 ± 4.45 | H= | <0.001* | <0.001* | <0.001* | 0.157 |
| Median (Min. – Max.) | 2.37 (0.05–3.50) | 6.17 (2.5–20) | 9.50 (2.7–25.7) | |||||
| Mean ± SD. | 2.67 ± 1.26 | 7.98 ± 3.51 | 9.36 ± 4.90 | H= | <0.001* | <0.001* | <0.001* | 0.368 |
| Median (Min. – Max.) | 2.91 (0.1–4) | 8.13 (2–17) | 8.10 (2.4–20.9) | |||||
BMI: Body Mass Index, Hb: Hemoglobin concentration, TLC; Total Leukocyte Count, ALT: Alanine Aminotransferase, AST: Aspartate Aminotransferase, CEA; Carcinoembryonic Antigen, CA19-9; Carbohydrate Antigen 19–9, ESR: Erythrocyte Sedimentation Rate, χ2: Chi-square test, F: F for ANOVA test, Pairwise comparison bet. The two groups were done using a post hoc test (Tukey), H: H for the Kruskal Wallis test, pairwise comparison bet. The two groups were done using a post hoc test (Dunn's for multiple comparisons test), P: P-value for comparing between the studied groups.
*: Statistically significant at p < 0.05, IQR: Inter Quartile Range.
Group I: Gastric cancer Group II: Benign gastric lesion Group III: Control.
Fig. 2A: Comparison between the three studied groups according to miR-30a-5p B: Comparison between the three studied groups according to miR-182–5p C: ROC curve for miR-30a-5p and miR-182–5p to predict gastric cancer patients (n = 47) from benign gastric lesions (n = 54) D: ROC curve for a combination of different markers to predict gastric cancer patients (n = 47) from benign gastric lesions (n = 54) E: Correlation between miR-30a-5p and TNM stage of gastric cancer patients F: Correlation between MiR-30a-5p and degree of pathological differentiation in gastric cancer patients.
Comparison between the two studied groups according to clinical data (history and examination).
| Group I (n = 47) | Group II (n = 54) | χ2 | P | |
| Presenting symptom | ||||
| Pain | 17 (36.2%) | 29 (53.7%) | 9.704 | |
| Dyspepsia | 4 (8.5%) | 4 (7.4%) | ||
| Hematemesis & melena | 9 (19.1%) | 6 (11.1%) | ||
| Anemia | 12 (25.5%) | 4 (7.4%) | ||
| Nausea & vomiting | 2 (4.3%) | 3 (5.6%) | ||
| Post-prandial fullness | 3 (6.4%) | 8 (14.8%) | ||
| History of smoking | 22 (46.8%) | 14 (25.9%) | 4.777* | 0.029* |
| History of weight loss | 23 (48.9%) | 0 (0%) | 34.218* | <0.001* |
| History of NSAIDs | 12 (25.5%) | 20 (37%) | 1.537 | 0.215 |
| Pallor | 20 (42.6%) | 8 (14.8%) | 9.649* | 0.002* |
NSAIDs: Nonsteroidal Anti-Inflammatory Drugs χ2: Chi-square test, MC: Monte Carlo.
P: p-value for comparing between the studied groups.
*: Statistically significant at p < 0.05.
Group I: Gastric cancer.
Group II: Benign gastric lesions.
Agreement (sensitivity, specificity) for different markers and combinations of markers to predict gastric cancer patients (n = 47) from benign gastric lesions (n = 54).
| AUC | p | 95% C·I | Cutoff | Sensitivity | Specificity | PPV | NPV | |
|---|---|---|---|---|---|---|---|---|
| CEA | 0.736 | <0.001* | 0.638–0.833 | >7.1 | 74.47 | 53.70 | 58.3 | 70.7 |
| CA19-9 | 0.840 | <0.001* | 0.755–0.925 | >21 | 78.72 | 72.22 | 71.2 | 79.6 |
| miR-30a-5p | 0.961 | <0.001* | 0.903–0.990 | ≤3.27 | 93.62 | 90.74 | 89.8 | 94.2 |
| miR-182–5p | 0.898 | <0.001* | 0.833–0.963 | ≤3.9 | 87.23 | 81.48 | 80.4 | 88.0 |
| 0.888 | <0.001* | 0.814–0.963 | 78.72 | 88.89 | 86.0 | 82.8 | ||
| CEA + CA19-9 + miR–30a-5p | 0.991 | <0.001* | 0.979–1.0 | 91.49 | 92.59 | 91.5 | 92.6 | |
| CEA + CA19-9 + miR-182–5p | 0.974 | <0.001* | 0.950–0.997 | 85.11 | 98.15 | 97.6 | 88.3 |
CEA; Carcinoembryonic antigen CA19-9; Carbohydrate antigen 19-9.
AUC: Area under a curve p value: Probability value.
CI: Confidence intervals.
NPV: Negative predictive value PPV: Positive predictive value.
*: Statistically significant at p < 0.05.
Relation between MiR-30a-5p and MiR-182–5p with different parameters in group I (n = 47).
| N | miR–30a-5P | miR-182–5 P | |||||
|---|---|---|---|---|---|---|---|
| Min. – Max. | Mean ± SD. | Median | Min. – Max. | Mean ± SD. | Median | ||
| Sex | |||||||
| Male | 0.05–3.50 | 2.14 ± 0.85 | 2.37 | 0.10–4.0 | 2.54 ± 1.23 | 2.90 | |
| Female | 1.25–3.50 | 2.35 ± 0.78 | 2.40 | 0.10–4.0 | 2.92 ± 1.31 | 3.65 | |
| | 213.50 (0.438) | 186.50 (0.167) | |||||
| No | 0.05–3.50 | 2.23 ± 0.83 | 2.37 | 0.43–4.0 | 2.88 ± 1.10 | 3.12 | |
| Yes | 1.25–3.50 | 2.14 ± 0.86 | 1.93 | 0.10–3.90 | 1.87 ± 1.51 | 1.56 | |
| | 176.0 (0.828) | 111.0 (0.055) | |||||
| 0 | 1.25–3.50 | 2.22 ± 0.71 | 2.37 | 0.10–3.92 | 2.57 ± 1.23 | 2.80 | |
| 1 | 1.25–3.50 | 2.34 ± 0.83 | 2.37 | 0.43–4.0 | 2.79 ± 1.28 | 3.30 | |
| 2 | 0.05–1.27 | 0.66 ± 0.86 | 0.66 | 0.90–3.70 | 2.30 ± 1.98 | 2.30 | |
| | 4.269 (0.118) | 1.103 (0.576) | |||||
| No | 1.25–3.50 | 2.11 ± 0.73 | 2.27 | 0.10–4.0 | 2.57 ± 1.31 | 2.70 | |
| Yes | 0.05–3.50 | 2.33 ± 0.93 | 2.55 | 0.43–4.0 | 2.78 ± 1.21 | 3.20 | |
| | 229.50 (0.331) | 260.0 (0.749) | |||||
| No | 1.25–3.50 | 2.32 ± 0.76 | 2.43 | 0.10–4.0 | 2.48 ± 1.24 | 2.70 | |
| Yes | 0.05–3.50 | 2.09 ± 0.89 | 2.32 | 0.43–4.0 | 2.87 ± 1.27 | 3.30 | |
| | 234.0 (0.370) | 212.0 (0.173) | |||||
| No | 0.05–3.50 | 2.28 ± 0.86 | 2.37 | 0.10–4.0 | 2.68 ± 1.26 | 2.90 | |
| Yes | 1.25–3.50 | 2.02 ± 0.74 | 2.01 | 0.10–4.0 | 2.65 ± 1.31 | 3.02 | |
| | 156.50 (0.191) | 208.0 (0.961) | |||||
| 1 | 1.25–3.50 | 2.16 ± 0.73 | 2.27 | 0.70–4.0 | 2.78 ± 1.05 | 2.65 | |
| 2 | 1.40–3.50 | 2.56 ± 0.77 | 2.79 | 0.10–4.0 | 2.28 ± 1.72 | 3.10 | |
| 3 | 1.25–3.22 | 2.22 ± 0.77 | 2.37 | 0.10–4.0 | 2.67 ± 1.29 | 2.90 | |
| 4 | 0.05–3.50 | 1.83 ± 1.38 | 1.42 | 0.90–3.80 | 2.89 ± 1.17 | 3.12 | |
| | 1.789 (0.617) | 0.193 (0.979) | |||||
| 0 | 0.05–3.50 | 2.27 ± 0.86 | 2.40 | 0.10–4.0 | 2.79 ± 1.27 | 3.16 | |
| 1 | 1.25–3.50 | 2.18 ± 0.87 | 2.37 | 0.65–4.0 | 2.66 ± 1.23 | 3.10 | |
| 2 | 1.25–2.90 | 2.26 ± 0.70 | 2.37 | 0.10–4.0 | 2.64 ± 1.30 | 2.70 | |
| 3 | 1.25 | 0.60 | |||||
| | 2.502 (0.475) | 2.338 (0.505) | |||||
| 0 | 0.05v3.50 | 2.29 ± 0.80 | 2.37 | 0.10–4.0 | 2.76 ± 1.23 | 3.10 | |
| 1 | 1.25–3.50 | 1.66 ± 0.91 | 1.28 | 0.65–3.80 | 2.01 ± 1.36 | 1.90 | |
| | 57.50* (0.034*) | 83.50 (0.214) | |||||
| I | 1.42–3.50 | 2.38 ± 0.78 | 2.32 | 0.43v4.0 | 2.94 ± 1.17 | 3.50 | |
| II | 1.40–3.22 | 2.59 ± 0.55 | 2.72 | 0.10–4.0 | 2.87 ± 1.11 | 3.10 | |
| III | 0.05–2.97 | 1.75 ± 0.93 | 1.42 | 0.10–4.0 | 2.48 ± 1.42 | 2.91 | |
| IV | 1.25–3.50 | 1.76 ± 0.90 | 1.28 | 0.60–3.80 | 2.06 ± 1.44 | 1.90 | |
| | 9.896*(0.019*) | 2.353 (0.502) | |||||
| No | 1.25–2.49 | 1.77 ± 0.61 | 1.49 | 0.80–3.70 | 2.06 ± 1.16 | 2.20 | |
| Low | 1.25–3.25 | 2.18 ± 0.73 | 2.35 | 0.43–4.0 | 2.58 ± 1.28 | 2.65 | |
| Moderate | 0.05–3.50 | 2.08 ± 0.90 | 2.77 | 0.10–4.0 | 2.57 ± 1.38 | 3.10 | |
| Well | 1.42–3.50 | 2.92 ± 0.73 | 3.20 | 2.91–3.90 | 3.57 ± 0.42 | 3.87 | |
| | 7.871 (0.049*) | 5.444 (0.142) | |||||
U: Mann Whitney test H: H for Kruskal Wallis test p: p-value for the association between different categories *: Statistically significant at p < 0.05.
Agreement (sensitivity and specificity) for miR-30a-5p and miR-182–5p to predict prognosis in gastric cancer (n = 47).
| AUC | p | 95% C·I | Cut off | Sensitivity | Specificity | PPV | NPV | |
|---|---|---|---|---|---|---|---|---|
| miR-30a-5p | 0.815 | <0.001* | 0.688–0.942 | ≤2.37 | 75.0 | 68.42 | 77.8 | 65.0 |
| miR–182–5p | 0.632 | 0.129 | 0.467–0.796 | ≤2.91 | 64.29 | 68.42 | 75.0 | 56.5 |
AUC: Area under a curve p value: Probability value.
CI: Confidence intervals.
NPV: Negative predictive value PPV: Positive predictive value.
*: Statistically significant at p ≤ 0.05.
Fig. 3A: Kaplan-Meier survival curve for progression-free survival of gastric cancer patients B: ROC curve for miR-182–5p and miR-30a-5p to predict prognosis in gastric cancer (n = 47) C: Kaplan-Meier survival curve for progression-free survival with miR-182–5p D: Kaplan-Meier survival curve for progression-free survival with miR-30a-5p.
Univariate and multivariate COX regression analysis for the parameters affecting Group I (gastric cancer patients) (n = 47) vs. Group II benign gastric lesion patients (n = 54).
| Univariate | Multivariate | |||
|---|---|---|---|---|
| P | HR (95%C·I) | p | HR (95%C·I) | |
| Sex (female) | 0.978 (0.442–2.165) | |||
| Age (years) | 1.013 (0.963–1.065) | |||
| BMI (kg/m2) | 1.053 (0.976–1.136) | |||
| Dyspepsia | 0.755 (0.179–3.181) | |||
| Hematemesis and melena | 1.064 (0.431–2.627) | |||
| Hb | 0.999 (0.844–1.181) | |||
| Platelet count | 1.0 (0.996–1.0) | |||
| History of smoking | 0.622 (0.291–1.332) | |||
| History of weight loss | 0.543 (0.254–1.161) | |||
| Pallor | 1.378 (0.652–2.912) | |||
| CEA | 0.998 (0.994–1.0) | |||
| CA19-9 | 0.998 (0.987–1.0) | |||
| ESR | 1.010 (0.998–1.0) | |||
| Size (cm) | 0.895 (0.689–1.163) | |||
| Family H. of gastric cancer | 0.280 (0.038–2.066) | |||
| miR-30a-5p (≤2.37) | 2.768 (1.175–6.523) | 2.472 (1.037–5.893) | ||
| miR–182–5p (≤2.91) | 2.164 (1.108–4.692) | 0.121 | 1.858 (0.848–4.071) | |
BMI: body mass index, Hb: Hemoglobin concentration.
CEA; Carcinoembryonic antigen, CA19-9; Carbohydrate antigen 19–9.
ESR: Erythrocyte sedimentation rate.
HR: Hazard ratio.
C·I: Confidence interval LL: Lower limit UL: Upper limit.
#: All variables with p < 0.05 were included in the multivariate.
*: Statistically significant at p < 0.05.