| Literature DB >> 34350391 |
Michael G Usher1, Roshan Tourani2, Gyorgy Simon2, Christopher Tignanelli2,3, Bryan Jarabek4, Craig E Strauss5, Stephen C Waring6, Niall A M Klyn7, Burke T Kealey8, Rabindra Tambyraja9, Deepti Pandita10, Karyn D Baum1.
Abstract
OBJECTIVE: Ensuring an efficient response to COVID-19 requires a degree of inter-system coordination and capacity management coupled with an accurate assessment of hospital utilization including length of stay (LOS). We aimed to establish optimal practices in inter-system data sharing and LOS modeling to support patient care and regional hospital operations.Entities:
Keywords: COVID-19; Interoperability; Predictive Modeling
Year: 2021 PMID: 34350391 PMCID: PMC8327377 DOI: 10.1093/jamiaopen/ooab055
Source DB: PubMed Journal: JAMIA Open ISSN: 2574-2531
Demographics, comorbidities, and complications of COVID-19 and univariate association with length of stay
| Derivation | Validation | |||||
|---|---|---|---|---|---|---|
|
| Length of stay, days (median, IQR) |
|
| Length of stay, days (median, IQR) |
| |
| Total | 2068 | 5 (2.34, 9.84) | 597a | 5.13 (2.46, 9.94) | ||
| Age (years) | ||||||
| 0–5 | 27 (1.3%) | 2 (1.0, 4.0) | <.001 | 3 (0.5%) | 2.2 (2.1, 8.0) | .434 |
| 5–18 | 24 (1.2%) | 2 (1.0, 4.0) | <.001 | 5 (0.8%) | 4.9 (3.4, 11.1) | .766 |
| 18–35 | 213 (10.3%) | 2.8 (1.8, 5.8) | <.001 | 99 (16.6%) | 2.1 (1.4, 3.7) | <.001 |
| 35–55 | 505 (24.4%) | 4.13 (2.0, 7.6) | <.001 | 134 (22.4%) | 5.9 (2.6, 10.0) | .534 |
| 55–75 | 789 (38.2%) | 5.87 (2.9, 11.2) | <.001 | 223 (37.3%) | 6.1 (3.4, 10.9) | <.001 |
| Greater than 75 | 510 (24.7%) | 6 (3.3, 11.0) | <.001 | 133 (22.2%) | 6.7 (3.6, 11.7) | <.001 |
| Male | 1006 (48.6%) | 5 (2.3, 10.1) | .773 | 282 (47.2%) | 6 (3.0, 12.9) | <.001 |
| Race | ||||||
| White | 933 (48.1%) | 5.86 (3.0, 11.0) | <.001 | 285 (47.7%) | 5.1 (2.7, 9.1) | .890 |
| Black | 475 (23.0%) | 4.32 (2.1, 8.5) | .052 | 119 (5.3%) | 3.7 (2.1, 8.7) | .039 |
| Hispanic | 260 (12.6%) | 4 (2.0, 7.8) | .001 | 32 (5.4%) | 6.1 (2.4, 11.0) | .573 |
| Asian | 172 (8.3%) | 4.7 (2.2, 9.5) | .597 | 77 (12.9%) | 5.8 (2.5, 12.6) | .171 |
| Native American | 67 (3.2%) | 4 (2.26, 7) | .172 | 11 (1.8%) | 5.2 (2.7, 9.3) | .341 |
| Other/missing | 184 (8.9%) | 4 (2.0, 9.0) | .015 | 64 (10.7%) | 6.1 (3.1, 11.7) | .083 |
| Comorbid conditions | ||||||
| No comorbidities | 468 (22.6%) | 4 (2.0, 8.0) | <.001 | 63 (10.6%) | 2.6 (1.6, 5.1) | <.001 |
| Hypertension | 899 (43.4%) | 5.9 (3.0, 11.6) | <.001 | 363 (60.8%) | 6.2 (3.6, 11.8) | <.001 |
| Diabetes | 213 (10.3%) | 7.73 (2.9, 11.1) | <.001 | 227 (38.0%) | 6.1 (3.4, 11.6) | <.001 |
| Obesity | 1355 (65.6%) | 5.15 (2.5, 10.2) | .001 | 457 (76.5%) | 6.0 (2.9, 11.4) | <.001 |
| Chronic kidney disease | 360 (17.4%) | 7.67 (3.7, 13.0) | <.001 | 166 (27.8%) | 7.3 (4.3, 14.3) | <.001 |
| Chronic obstructive pulmonary disease | 372 (18.0%) | 5.5 (2.8, 10.6) | .054 | 147 (24.6%) | 6.1 (3.2, 11.0) | .026 |
| Cancer | 129 (6.2%) | 6.3 (3.37, 12.0) | .011 | 69 (11.6%) | 5.1 (3.0, 9.2) | .555 |
| Congestive heart failure | 255 (12.4%) | 6.72 (3.7, 12.2) | <.001 | 128 (21.4%) | 7.1 (3.9, 12.2) | <.001 |
| Critical illness | ||||||
| General floor | 1645 (79.6%) | 4.1 (2.0, 7.5) | <.001 | 344 (57.6%) | 3.2 (2.0, 6.2) | <.001 |
| ICU without mechanical ventilation | 84 (4.0%) | 7.9 (4.7, 11.4) | <.001 | 184 (30.8%) | 6.9 (5.0, 11.1) | <.001 |
| ICU with mechanical ventilation | 339 (16.4%) | 14 (6.7, 23.9) | <.001 | 69 (11.6%) | 18.1 (12.5, 30.7) | <.001 |
| Patient flow | ||||||
| Admit from a nursing facility | 200 (9.7%) | 9 (5, 15.9) | <.001 | 72 (12.1%) | 7.7 (4.4, 11.8) | <.001 |
| Inter-hospital transfer | 378 (18.3%) | 8.6 (4.3, 15.9) | <.001 | 336 (56.2%) | 7.4 (5.0, 13.6) | <.001 |
Note: Threshold for statistical significance <0.002.
aIncludes 40 patients who were admitted during the validation period but were discharged afterwards. These were not included in the week to week validation analysis.
Figure 1.Multivariate prediction of hospital length of stay. Patient predictors by importance (approximated by the Gini impurity index) for length of stay >5 days (A), AUC 0788 (95% CI 0.732–0.784). Length of stay >10 days (B), AUC 0.814 (95% CI 0.751–0.807), and length of stay >15 days (C), AUC 0.836 (0.801–0.860). aMortality risk: independent risk of mortality, generated by a random forest model excluding complications illustrated in Supplementary Figure S2. bElixhauser comorbidity sum. cFrom individual elixhauser comorbidities. All vitals represent the first vital taken that admission.
Multivariate prediction of hospital length of stay by a generalized linear model
| LOS >5 days (AUROC 0.772: 95% CI 0.732–0.784) | LOS >10 days (AUROC 0.778: 95% CI 0.751–0.807) | LOS >15 days (AUROC 0.800 95% CI 0.766–0.828) | |||||||
|---|---|---|---|---|---|---|---|---|---|
| Coef | Standard error |
| Coef | Standard error |
| Coef | Standard error |
| |
| Age | 0.012 | 0.054 | <.001 | 0.012 | 0.054 | <.001 | – | – | NS |
| Admission from nursing home | 1.028 | 0.057 | <.001 | 1.028 | 0.057 | <.001 | – | – | NS |
| Inter-hospital transfer | 0.495 | 0.055 | <.001 | 0.495 | 0.055 | <.001 | – | – | NS |
| ICU | 0.958 | 0.053 | <.001 | 0.958 | 0.053 | <.001 | 0.793 | 0.104 | <.001 |
| No O2 administered | −1.361 | 0.054 | <.001 | −1.361 | 0.054 | <.001 | −0.811 | 0.102 | <.001 |
| Weight loss | 0.723 | 0.060 | <.001 | 0.723 | 0.060 | <.001 | 0.653 | 0.061 | .001 |
| Mechanical ventilation | – | – | NS | – | – | NS | 1.418 | 0.089 | <.001 |
| Coagulopathy | – | – | NS | – | – | NS | 0.697 | 0.058 | .002 |
Figure 2.Comparison of weekly model performance between generalized linear model (GLM) and random forest (RF) models across a 12-week validation period measured by AUROC (solid line) and 95% CI (dotted lines for upper and lower limits). A. Length of Stay > 5 days, B. Length of Stay > 10 days, C. Length of Stay > 15 days.
Aggregate performance of random forest (RF) and generalized linear model (GLM) against the unadjusted population average (Avg) in predicting future discharge timing for patients admitted during a 12-week validation period.
| Discharged in 5 days | Discharged in 10 days | Discharged in 15 days | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Predicted | Actual | Predicted | Actual | Predicted | Actual | ||||||||
| Week |
| RF | GLM | Avg | RF | GLM | Avg | RF | GLM | Avg | |||
| 1 | 42 | 14 | 14 | 17 | 14 | 21 | 21 | 28 | 20 | 26 | 26 | 34 | 27 |
| 2 | 34 | 11 | 14 | 13 | 10 | 17 | 15 | 22 | 17 | 19 | 22 | 27 | 23 |
| 3 | 33 | 16 | 15 | 15 | 15 | 22 | 21 | 22 | 22 | 25 | 26 | 26 | 26 |
| 4 | 40 | 13 | 21 | 16 | 15 | 22 | 20 | 25 | 20 | 33 | 34 | 32 | 30 |
| 5 | 38 | 17 | 21 | 15 | 12 | 24 | 27 | 24 | 26 | 27 | 27 | 30 | 29 |
| 6 | 51 | 27 | 21 | 20 | 33 | 38 | 35 | 41 | 39 | 42 | 41 | 40 | 43 |
| 7 | 38 | 14 | 11 | 15 | 21 | 28 | 26 | 25 | 32 | 32 | 32 | 30 | 36 |
| 8 | 46 | 24 | 23 | 19 | 21 | 39 | 36 | 30 | 36 | 41 | 42 | 37 | 42 |
| 9 | 70 | 28 | 29 | 29 | 28 | 51 | 47 | 46 | 47 | 58 | 54 | 56 | 57 |
| 10 | 59 | 21 | 18 | 24 | 23 | 44 | 43 | 39 | 46 | 51 | 51 | 48 | 49 |
| 11 | 48 | 22 | 18 | 20 | 19 | 35 | 37 | 32 | 31 | 44 | 40 | 39 | 40 |
| 12 | 58 | 27 | 28 | 24 | 30 | 45 | 58 | 39 | 44 | 52 | 45 | 47 | 49 |
| Total: | 557 | 234 | 233 | 227 | 241 | 386 | 386 | 373 | 380 | 450 | 440 | 446 | 451 |