| Literature DB >> 34350256 |
Yi-Jun Chen1, Wen-Hua Jian1, Zhen-Yu Liang1, Wei-Jie Guan2, Wen-Hua Liang3, Ru-Chong Chen2, Chun-Li Tang2, Tao Wang2, Heng-Rui Liang3, Yi-Min Li4, Xiao-Qing Liu4, Ling Sang4, Lin-Ling Cheng1, Feng Ye1, Shi-Yue Li1, Nuo-Fu Zhang1, Zhe Zhang1, Ying Fang1, Jian-Xing He3, Nan-Shan Zhong1, Jin-Ping Zheng1.
Abstract
BACKGROUND: Risk of adverse outcomes in COVID-19 patients by stratifying by the time from symptom onset to confirmed diagnosis status is still uncertain.Entities:
Keywords: COVID-19; early consultation; early diagnosis; survival analysis; time from symptom onset to confirmed diagnosis
Year: 2021 PMID: 34350256 PMCID: PMC8263884 DOI: 10.21037/atm-20-7210
Source DB: PubMed Journal: Ann Transl Med ISSN: 2305-5839
Time from symptom onset to diagnosis confirmed and from admission to reaching sever level
| Time | N | Mean | Standard deviation | Min | 1st Qu. | Median | 3rd Qu. |
|---|---|---|---|---|---|---|---|
| From symptom onset to diagnosis confirmed | 905 | 6.97 | 5.33 | 0 | 3 | 6 | 9 |
| From symptom onset to first medical visit | 1,385 | 3.67 | 4.12 | 0 | 0 | 3 | 6 |
| From first medical visit to diagnosis confirmed | 882 | 3.73 | 5.03 | 0 | 1 | 2 | 5 |
| From admission to reaching sever level | 1,240 | 9.34 | 5.94 | 0 | 7 | 8 | 11 |
In this cohort, 1,590 cases in total, there are 1,501 cases with symptom onset date, 1,512 cases with first medical visit date, 935 cases with diagnosis confirmation date, 1,246 cases with admission date, 234 cases developed to severe level and with the exact date. The missing data in 4 kinds of time length above met the assumption for Missing Completely at Random (MCAR), and no method of replacement was used, according to logit statistics method considering age, pre-existing diseases, and endpoint factors.
Cut-offs and Log-rank test results of diagnosis time-efficiency
| Durations | N | Cut point | Statistic | Log-rank | |
|---|---|---|---|---|---|
| Chisq | P value | ||||
| From symptom onset to diagnosis confirmation | 866 | 5 | 4.14 | 21.3 | <0.0001 |
| From symptom onset to first medical visit | 1,113 | 4 | 3.72 | 11.9 | 0.00016 |
| From first medical visit to diagnosis confirmation | 844 | 3 | 2.99 | 12.4 | 0.00043 |
Figure 1Maximally selected log-rank statistics for the cutoff point of duration from symptom onset to confirmed diagnosis. (A) Patients divided into two groups, high (right red part) and low (left blue part), based on their duration from symptom onset to confirmed diagnosis; the cutoff point (the dotted line, showing the highest point) defined by maximally selected rank statistics. (B) The time-dependent risk of reaching a severe disease level between patients with “high” duration from symptom onset to confirmed diagnosis (yellow curve) and “low” duration from symptom onset to confirmed diagnosis (blue curve); transparent parts indicate the 95% confidence interval (95% CI). Maximally selected rank statistics allow the evaluation of cutoff points, which provide the classification of observations into two groups by a continuous or ordinal predictor variable. The computation of the exact distribution of a maximally selected rank statistic is discussed, and a new lower bound of the distribution is derived based on an extension of an algorithm for the exact distribution of a linear rank statistic.
Figure 2Maximally selected log-rank statistics for cutoff points of durations from symptom onset to first medical visit and from first medical visit to confirmed diagnosis. (A) Patients divided into two groups, high (right red part) and low (left blue part), based on their duration from symptom onset to first medical consultation; the cutoff point (the dotted line, showing the highest point) defined by maximally selected rank statistics. (B) The time-dependent risk of reaching a severe disease level between patients with “high” duration from symptom onset to first medical consultation (yellow curve) and “low” duration from symptom onset to first medical consultation (blue curve); transparent parts indicate the 95% confidence interval (95% CI). (C) Patients divided into two groups, high (right red part) and low (left blue part), based on their duration from first medical consultation to confirmed diagnosis; the cutoff point (the dotted line, showing the highest point) was defined by maximally selected rank statistics. (D) The time-dependent risk of reaching a severe disease level between patients with “high” duration from first medical consultation to confirmed diagnosis (yellow curve) and “low” duration from symptom onset to confirmed diagnosis (blue curve); transparent parts indicate the 95% confidence interval (95% CI). Maximally selected rank statistics allow the evaluation of cutoff points, which provide the classification of observations into two groups by a continuous or ordinal predictor variable. The computation of the exact distribution of a maximally selected rank statistic is discussed, and a new lower bound of the distribution is derived based on an extension of an algorithm for the exact distribution of a linear rank statistic.
Univariate log-rank analysis and multivariate Cox proportional hazard regression analysis
| Log-rank test | multivariate COX proportional hazard regression | |||||
|---|---|---|---|---|---|---|
| P value | coef | exp(coef) (95% CI) | z | P value | ||
| Model 1 | ||||||
| age | <0.01 | 0.03 | 1.03 (1.01, 1.04) | 3.86 | <0.01*** | |
| gender | 0.03 | −0.30 | 0.74 (0.51, 1.08) | −1.56 | 0.12 | |
| Smoking status | 0.9 | −0.34 | 0.71 (0.37, 1.35) | −1.05 | 0.30 | |
| Comorbidities | <0.01 | 0.61 | 1.84 (1.23, 2.73) | 3.00 | <0.01** | |
| Duration from symptom onset to confirmation >5 days | <0.01 | 0.53 | 1.69 (1.10,2.60) | 2.40 | 0.01* | |
| Model 2 | ||||||
| age | <0.01 | 0.03 | 1.03 (1.01, 1.04) | 3.91 | <0.01*** | |
| gender | 0.03 | −0.29 | 0.75 (0.51, 1.11) | −1.45 | 0.14 | |
| Smoking status | 0.90 | −0.47 | 0.63 (0.31, 1.26) | −1.31 | 0.19 | |
| Comorbidities | <0.01 | 0.57 | 1.77 (1.18, 2.68) | 2.73 | <0.01** | |
| Duration from symptom onset to first visit >4 days | <0.01 | 0.44 | 1.56 (1.07, 2.26) | 2.34 | 0.02* | |
| Duration from first visit to confirmation >3 days | <0.01 | 0.37 | 1.45 (0.99, 2.13) | 1.89 | 0.06# | |
***P<0.001; **P<0.01; *P<0.05; #P<0.1.
Figure 3Conditional inference tree models for COVID-19 prognosis with time from symptom onset to confirmed diagnosis and other prehospital factors. (A) The time-dependent risk of reaching a severe disease level divided into 5 sections according to the significantly separated nodes in the model tree; p values were calculated by the corresponding time series test (log-rank test); the model included duration from symptom onset to confirmed diagnosis, age, and chronic comorbidity status. (B) The time-dependent risk of reaching a severe disease level divided into 5 sections according to the significant separated nodes in the model tree; p values were calculated by corresponding time series test (log-rank test); the model included duration from symptom onset to first medical consultation, duration from first medical consultation to confirmed diagnosis, age, and chronic comorbidity status. The conditional inference tree (CTREE) recursively performs univariate splits of the dependent variable based on values on a set of covariates. CTREE tends to select variables that have many possible splits or many missing values using a significance test procedure to select variables instead of selecting the variable that maximizes an information measure (e.g., Gini coefficient).
Comparison of prognosis characteristics and first inspection results on admission between patients visiting the clinic in 4 days after symptom onset and the others
| Variables | Total | Time from symptom onset to first medical visit ≤4 days | Time from symptom onset to first medical visit >4 days | P value |
|---|---|---|---|---|
| Outcomes | ||||
| Sever level | 209 (15.09) | 118 (12.81) | 91 (19.61) | <0.01 |
| septic shock | 24 (3.31) | 13 (2.73) | 11 (4.42) | 0.23 |
| Secondary bacterial or fungal infection | 62 (9.73) | 42 (10.02) | 20 (9.17) | 0.73 |
| ARDS | 72 (9.99) | 38 (8.02) | 34 (13.77) | 0.02 |
| Acute renal failure | 15 (2.10) | 10 (2.13) | 5 (2.05) | 0.95 |
| DIC | 6 (0.84) | 2 (0.43) | 4 (1.63) | 0.09 |
| Rhabdomyolysis | 1 (0.14) | 1 (0.21) | 0 (0.00) | 0.47 |
| Demographic characteristic | ||||
| Age | 48.0 (36.00–61.00) | 47.0 (35.00–60.00) | 51.0 (40.00–63.00) | <0.01 |
| Gender, male | 795 (57.65) | 514 (55.99) | 281 (60.95) | 0.08 |
| Former/current smoker | 102 (7.36) | 63 (6.84) | 39 (8.41) | 0.29 |
| Symptoms | ||||
| Dry cough | 972 (72.65) | 617 (69.56) | 355 (78.71) | <0.01 |
| Pharyngodynia | 171 (14.58) | 116 (14.93) | 55 (13.89) | 0.63 |
| Conjunctival congestion | 8 (0.67) | 6 (0.76) | 2 (0.49) | 0.58 |
| Nasal congestion | 65 (5.62) | 38 (4.99) | 27 (6.82) | 0.20 |
| Headache | 190 (16.06) | 134 (17.07) | 56 (14.07) | 0.18 |
| Productive cough | 479 (37.57) | 281 (33.22) | 198 (46.15) | <0.00 |
| Fatigue | 542 (44.54) | 347 (43.27) | 195 (46.99) | 0.22 |
| Hemoptysis | 13 (1.11) | 9 (1.15) | 4 (1.02) | 0.83 |
| Shortness of breath | 303 (21.88) | 158 (17.16) | 145 (31.25) | <0.01 |
| Nausea/vomiting | 75 (6.12) | 50 (6.17) | 25 (6.02) | 0.92 |
| Diarrhea | 55 (4.53) | 34 (4.23) | 21 (5.13) | 0.47 |
| Myalgia/arthralgia | 223 (18.61) | 138 (17.38) | 85 (21.04) | 0.12 |
| Chill | 154 (12.94) | 96 (12.15) | 58 (14.50) | 0.25 |
| Comorbidities | ||||
| Chronic comorbidities | 357 (25.78) | 236 (25.62) | 121 (26.08) | 0.86 |
| COPD | 21 (1.52) | 8 (0.87) | 13 (2.80) | <0.01 |
| Diabetes | 116 (8.38) | 77 (8.36) | 39 (8.41) | 0.98 |
| Hypertension | 249 (17.98) | 162 (17.59) | 87 (18.75) | 0.60 |
| Coronary heart disease | 49 (3.54) | 35 (3.80) | 14 (3.02) | 0.46 |
| Cerebrovascular disease | 27 (1.95) | 15 (1.63) | 12 (2.59) | 0.22 |
| Hepatitis B | 23 (1.66) | 16 (1.74) | 7 (1.51) | 0.75 |
| Malignancy | 13 (0.94) | 9 (0.98) | 4 (0.86) | 0.83 |
| Chronic renal diseases | 17 (1.23) | 15 (1.63) | 2 (0.43) | 0.06 |
| Immunodeficiency | 3 (0.22) | 1 (0.11) | 2 (0.43) | 0.22 |
| Radiological parameters | ||||
| Abnormality | 1,094 (85.07) | 684 (81.33) | 410 (92.13) | <0.01 |
| Abnormality in X-ray | 219 (63.66) | 128 (57.92) | 91 (73.98) | <0.01 |
| Abnormality in CT | 1,019 (85.41) | 636 (82.28) | 383 (91.19) | <0.01 |
| Having chest X-ray | 1193 (91.56) | 773 (90.73) | 420 (93.13) | 0.14 |
| Having chest CT | 344 (29.50) | 221 (28.63) | 123 (31.22) | 0.36 |
| Ground-glass opacities | 711 (55.29) | 427 (50.77) | 284 (63.82) | <0.01 |
| Local pulmonary infiltrates | 551 (42.85) | 349 (41.50) | 202 (45.39) | 0.18 |
| Pulmonary infiltrates | 686 (53.34) | 409 (48.63) | 277 (62.25) | <0.01 |
| Interstitial disorders | 195 (15.16) | 115 (13.67) | 80 (17.98) | 0.04 |
| Ground-glass opacities in X-ray | 80 (23.26) | 47 (21.27) | 33 (26.83) | 0.24 |
| Local pulmonary infiltrates in X-ray | 108 (31.40) | 71 (32.13) | 37 (30.08) | 0.70 |
| Pulmonary infiltrates in X-ray | 153 (44.48) | 84 (38.01) | 69 (56.10) | <0.01 |
| Interstitial disorders in X-ray | 26 (7.56) | 11 (4.98) | 15 (12.20) | 0.02 |
| Ground-glass opacities in CT | 686 (57.50) | 412 (53.30) | 274 (65.24) | <0.01 |
| Local pulmonary infiltrates in CT | 497 (41.66) | 311 (40.23) | 186 (44.29) | 0.18 |
| Pulmonary infiltrates in CT | 613 (51.38) | 366 (47.35) | 247 (58.81) | <0.01 |
| Interstitial disorders in CT | 184 (15.42) | 111 (14.36) | 73 (17.38) | 0.168 |
| First inspection results on admission | ||||
| Temperature on admission (°C) | 37.2 (36.70–38.00) | 37.3 (36.70–38.00) | 37.2 (36.70–38.00) | 0.41 |
| PaO2 (mmHg) | 81.34 (62.95–97.75) | 83.0 (65.10–98.00) | 77.0 (58.98–96.00) | 0.08 |
| FiO2 (%) | 21.0 (21.00–29.00) | 21.0 (21.00–29.00) | 21.0 (21.00–29.00) | 0.33 |
| Oxygen saturation under air (%) | 96.0 (94.00–98.00) | 97.0 (95.00–98.00) | 95.0 (93.00–97.85) | <0.01 |
| WBC (×109/L) | 4.92 (3.60–6.43) | 4.84 (3.53–6.27) | 5.21 (3.89–6.62) | 0.01 |
| Lymphocyte (×109/L) | 0.97 (0.70–1.34) | 0.99 (0.70–1.31) | 0.95 (0.70–1.40) | 0.91 |
| Blood platelet (×109/L) | 169.0 (132.00–213.00) | 169.0 (132.00–213.00) | 170.0 (133.00–213.00) | 0.70 |
| Hemoglobin (g/dL) | 132.0 (117.00–145.00) | 132.0 (117.10–146.00) | 132.0 (116.00–143.00) | 0.74 |
| C-reactive protein (mg/L) | 15.63 (6.20–44.10) | 12.88 (4.85–35.03) | 24.75 (10.00–55.41) | <0.01 |
| Procalcitonin (ng/mL) | 0.05 (0.04–0.11) | 0.05 (0.04–0.11) | 0.05 (0.04–0.11) | 0.96 |
| Lactic dehydrogenase (U/L) | 247.0 (191.00–338.20) | 230.0 (180.00–312.00) | 274.0 (224.00–387.25) | <0.01 |
| Glutamic oxalacetic transaminase (U/L) | 29.75 (22.00–42.00) | 28.0 (21.91–40.00) | 32.0 (24.00–43.85) | <0.01 |
| Glutamic-pyruvic transaminase (U/L) | 26.0 (17.00–41.00) | 25.0 (16.23–40.00) | 26.0 (18.00–43.00) | 0.09 |
| Direct bilirubin (μmol/L) | 3.3 (2.40–4.80) | 3.2 (2.40–4.80) | 3.5 (2.50–4.90) | 0.05 |
| Indirect bilirubin (μmol/L) | 6.5 (4.51–8.80) | 6.5 (4.50–8.70) | 6.7 (4.60–9.17) | 0.26 |
| Total bilirubin (μmol/l) | 9.98 (7.40–13.40) | 9.8 (7.20–13.10) | 10.2 (7.69–13.62) | 0.10 |
| Creatine kinase (U/L) | 85.2 (54.80–142.70) | 83.0 (56.00–138.75) | 93.0 (52.00–155.00) | 0.43 |
| Creatinine (μmol/L) | 68.0 (54.42–82.00) | 68.0 (54.45–82.25) | 68.0 (54.70–80.40) | 0.89 |
| Hypersensitive troponin I (pg/mL) | 2.2 (0.01–9.45) | 2.0 (0.01–9.96) | 2.75 (0.01–8.72) | 0.78 |
| Albumin (g/L) | 38.8 (33.40–43.30) | 39.5 (33.80–44.10) | 37.3 (32.00–41.40) | <0.01 |
| D-Dimer (mg/L) | 0.53 (0.23–1.42) | 0.49 (0.21–1.06) | 0.59 (0.28–1.72) | <0.01 |
| Prothrombin time (s) | 12.0 (11.00–13.00) | 12.0 (11.00–13.00) | 12.0 (11.00–13.00) | 0.92 |
| Activated partial thromboplastin time (s) | 31.0 (26.00–35.00) | 31.0 (26.00–35.00) | 30.5 (26.00–35.00) | 0.77 |
Data were expressed as means (standard deviation), for parametric continuous data, as median (first quartile; third quartile), for parametric continuous data, or as n (%), where n is the sample number of patients, and % is the proportion with available data. ARDS, acute respiratory distress syndrome; DIC, disseminated intravascular coagulation; COPD, chronic obstructive pulmonary disease.