| Literature DB >> 34343725 |
Mohammad Fayyad-Kazan1, Rawan Makki1, Najwa Skafi1, Mahmoud El Homsi2, Aline Hamade3, Rania El Majzoub4, Eva Hamade5, Hussein Fayyad-Kazan6, Bassam Badran7.
Abstract
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Keywords: Biomarkers; Coronavirus; Plasma; Severe acute respiratory syndrome; miRNAs
Year: 2021 PMID: 34343725 PMCID: PMC8325559 DOI: 10.1016/j.meegid.2021.105020
Source DB: PubMed Journal: Infect Genet Evol ISSN: 1567-1348 Impact factor: 3.342
List of patients included in this study.
| Patient number | Gender | Age | Disease severity |
|---|---|---|---|
| 1 | M | 31 | Moderate |
| 2 | M | 45 | Moderate |
| 3 | M | 50 | Moderate |
| 4 | M | 44 | Mild |
| 5 | M | 36 | Mild |
| 6 | M | 32 | Mild |
| 7 | M | 47 | Mild |
| 8 | M | 55 | Severe |
| 9 | M | 60 | Moderate |
| 10 | M | 59 | Severe |
| 11 | M | 48 | Mild |
| 12 | M | 31 | Mild |
| 13 | M | 37 | Mild |
| 14 | M | 55 | Severe |
| 15 | M | 52 | Moderate |
| 16 | M | 44 | Moderate |
| 17 | M | 30 | Mild |
| 18 | M | 60 | Severe |
| 19 | M | 48 | Moderate |
| 20 | M | 51 | Mild |
| 21 | F | 30 | Mild |
| 22 | F | 45 | Mild |
| 23 | F | 47 | Mild |
| 24 | F | 52 | Moderate |
| 25 | F | 59 | Severe |
| 26 | F | 51 | Moderate |
| 27 | F | 38 | Mild |
| 28 | F | 34 | Mild |
| 29 | F | 55 | Moderate |
| 30 | F | 58 | Severe |
| 31 | F | 44 | Moderate |
| 32 | F | 37 | Moderate |
| 33 | F | 33 | Moderate |
Differentially expressed miRNAs in the plasma of six COVID-19 patients versus six Healthy individuals as revealed by qPCR panels.
| MicroRNA | Fold change | P-value |
|---|---|---|
| Upregulated | ||
| hsa-miR-15a-5p | 9.1 | 0.02 |
| hsa-miR-19a-3p | 10.2 | 0.002 |
| hsa-miR-19b-3p | 7.2 | 0.0019 |
| hsa-miR-23a-3p | 8.2 | 0.018 |
| hsa-miR-92a-3p | 20 | 0.0011 |
| hsa-miR-140-3p | 4.2 | 0.04 |
| hsa-miR-194-5p | 6.5 | 0.03 |
| hsa-miR-320a | 11.7 | 0.01 |
| Downregulated | ||
| hsa-miR-17-5p | 0.19 | 0.018 |
| hsa-miR-142-5p | 0.32 | 0.01 |
| hsa-miR-191-5p | 0.22 | 0.039 |
| hsa-miR-374a-5p | 0.18 | 0.042 |
Fig. 1Differentially expressed miRNAs in plasma of SARS-CoV-2-infected patients versus healthy individuals. Plasma was obtained from 12 individuals (6 SARS-CoV-2-infected patients and 6 healthy individuals). The relative expression of miRNAs was quantified by quantitative RT-PCR. *p < 0.05, **p < 0.01, ***p < 0.001 infected patients versus Healthy individuals (Unpaired Student's t-test).
Common KEGG pathways for the upregulated miRNAs.
| KEGG pathway | P-value |
|---|---|
| Proteoglycans in cancer (hsa05205) | <0.0001 |
| Renal cell carcinoma (hsa05211) | <0.0001 |
| Chronic myeloid leukemia (hsa05220) | <0.0001 |
| Prostate cancer (hsa05215) | <0.0001 |
| Hepatitis B (hsa05161) | <0.0001 |
| Glioma (hsa05214) | <0.0001 |
| Endometrial cancer (hsa05213) | 0.00012 |
| Bacterial invasion of epithelial cells (hsa05100) | 0.00013 |
| Non-small cell lung cancer (hsa05223) | 0.00015 |
| Colorectal cancer (hsa05210) | 0.0002 |
| Pancreatic cancer (hsa05212) | 0.0006 |
| Small cell lung cancer (hsa05222) | 0.004 |
| Central carbon metabolism in cancer (hsa05230) | 0.006 |
| Epstein-Barr virus infection (hsa05169) | 0.007 |
| Melanoma (hsa05218) | 0.007 |
| Bladder cancer (hsa05219) | 0.01 |
| HTLV-I infection (hsa05166) | 0.02 |
| Acute myeloid leukemia (hsa05221) | 0.03 |
| Thyroid cancer (hsa05216) | 0.04 |
Common KEGG pathways for the down-regulated miRNAs.
| KEGG pathway | P-value |
|---|---|
| Hepatitis B (hsa05161) | <0.0001 |
| Proteoglycans in cancer (hsa05205) | <0.0001 |
| Glioma (hsa05214) | <0.0001 |
| Chronic myeloid leukemia (hsa05220) | <0.0001 |
| Viral carcinogenesis (hsa05203) | <0.0001 |
| Renal cell carcinoma (hsa05211) | <0.0001 |
| Bacterial invasion of epithelial cells (hsa05100) | <0.0001 |
| Pancreatic cancer (hsa05212) | <0.0001 |
| Bladder cancer (hsa05219) | <0.0001 |
| Prostate cancer (hsa05215) | <0.0001 |
| Colorectal cancer (hsa05210) | <0.0001 |
| Non-small cell lung cancer (hsa05223) | <0.0001 |
| Endometrial cancer (hsa05213) | 0.00022 |
| Melanoma (hsa05218) | 0.00024 |
| Small cell lung cancer (hsa05222) | 0.00035 |
| Thyroid cancer (hsa05216) | 0.0011 |
| Acute myeloid leukemia (hsa05221) | 0.0029 |
| Hepatitis C (hsa05160) | 0.0037 |
| HTLV-I infection (hsa05166) | 0.044 |
Fig. 2Receiver operating characteristics (ROC) curve analysis using miR-19a-3p, miR-19b-3p, and miR-92a-3p for discriminating SARS-CoV-2-infected patients. Plasma miR-19a-3p yielded an AUC of 0.815 (P = 0.031) with 88% sensitivity and 85% specificity in discriminating infected patients (Panel A). Plasma miR-19b-3p yielded AUC of 0.875 (P = 0.012) with 89% sensitivity and 86% specificity in discriminating infected patients (Panel B). Plasma miR-92a-3p yielded an AUC of 0.850 (P = 0.025) with 90% sensitivity and 87% specificity in discriminating infected patients (Panel C). Combined ROC analysis revealed a greater AUC of 0.917 (P = 0.0001) with 92% sensitivity and 89% specificity in discriminating infected patients (Panel D).
Profiling plasma miR-19a-3p, miR-19b-3p and miR-92a-3p expression levels in different COVID-19 patients with different Cqs of RdRp gene.
| Patients | Cq of RdRp | miR-19a-3p | miR-19b-3p | miR-92a-3p | |||
|---|---|---|---|---|---|---|---|
| Fold change | P-value | Fold change | P-value | Fold change | P-value | ||
| Patients (1–3) | 34 | 5.7 | 2.6 | 4.5 | |||
| Patients (4–6) | 32 | 6.5 | 2.8 | 4.8 | |||
| Patients (7–9) | 31 | 6.6 | 2.5 | 4.2 | |||
| Patients (10−12) | 30 | 6.9 | 2.9 | 4.7 | |||
| Patients (13–15) | 28 | 7.5 | 3.5 | 6.7 | |||
| Patients (16, 18) | 24 | 8.3 | 4.1 | 9.5 | |||
| Patients (19, 21) | 20 | 9.2 | 5.5 | 15.8 | |||
| Patients (22, 24) | 17 | 9.9 | 6.2 | 18.2 | |||
| Patients (25, 27) | 15 | 10.8 | 6.4 | 18.8 | |||