Literature DB >> 34343014

Microbial Rhodopsins: The Last Two Decades.

Andrey Rozenberg1, Keiichi Inoue2, Hideki Kandori3, Oded Béjà1.   

Abstract

Microbial rhodopsins are diverse photoreceptive proteins containing a retinal chromophore and are found in all domains of cellular life and are even encoded in genomes of viruses. These rhodopsins make up two families: type 1 rhodopsins and the recently discovered heliorhodopsins. These families have seven transmembrane helices with similar structures but opposing membrane orientation. Microbial rhodopsins participate in a portfolio of light-driven energy and sensory transduction processes. In this review we present data collected over the last two decades about these rhodopsins and describe their diversity, functions, and biological and ecological roles.

Entities:  

Keywords:  heliorhodopsins; ion pumps; microbial rhodopsins; photosensors; retinal

Mesh:

Substances:

Year:  2021        PMID: 34343014     DOI: 10.1146/annurev-micro-031721-020452

Source DB:  PubMed          Journal:  Annu Rev Microbiol        ISSN: 0066-4227            Impact factor:   15.500


  19 in total

Review 1.  Optogenetics at the presynapse.

Authors:  Benjamin R Rost; Jonas Wietek; Ofer Yizhar; Dietmar Schmitz
Journal:  Nat Neurosci       Date:  2022-07-14       Impact factor: 28.771

2.  Dissecting Light Sensing and Metabolic Pathways on the Millimeter Scale in High-Altitude Modern Stromatolites.

Authors:  Daniel Gonzalo Alonso-Reyes; Fátima Silvina Galván; José Matías Irazoqui; Ariel Amadio; Diogo Tschoeke; Fabiano Thompson; Virginia Helena Albarracín; María Eugenia Farias
Journal:  Microb Ecol       Date:  2022-09-26       Impact factor: 4.192

3.  Rhodopsin-bestrophin fusion proteins from unicellular algae form gigantic pentameric ion channels.

Authors:  Andrey Rozenberg; Igor Kaczmarczyk; Donna Matzov; Johannes Vierock; Takashi Nagata; Masahiro Sugiura; Kota Katayama; Yuma Kawasaki; Masae Konno; Yujiro Nagasaka; Mako Aoyama; Ishita Das; Efrat Pahima; Jonathan Church; Suliman Adam; Veniamin A Borin; Ariel Chazan; Sandra Augustin; Jonas Wietek; Julien Dine; Yoav Peleg; Akira Kawanabe; Yuichiro Fujiwara; Ofer Yizhar; Mordechai Sheves; Igor Schapiro; Yuji Furutani; Hideki Kandori; Keiichi Inoue; Peter Hegemann; Oded Béjà; Moran Shalev-Benami
Journal:  Nat Struct Mol Biol       Date:  2022-06-16       Impact factor: 18.361

Review 4.  Rhodopsins: An Excitingly Versatile Protein Species for Research, Development and Creative Engineering.

Authors:  Willem J de Grip; Srividya Ganapathy
Journal:  Front Chem       Date:  2022-06-22       Impact factor: 5.545

5.  Membrane Protein Activity Induces Specific Molecular Changes in Nanodiscs Monitored by FTIR Difference Spectroscopy.

Authors:  Federico Baserga; Antreas Vorkas; Fucsia Crea; Luiz Schubert; Jheng-Liang Chen; Aoife Redlich; Mariafrancesca La Greca; Julian Storm; Sabine Oldemeyer; Kirsten Hoffmann; Ramona Schlesinger; Joachim Heberle
Journal:  Front Mol Biosci       Date:  2022-06-13

6.  Coupling a Live Cell Directed Evolution Assay with Coevolutionary Landscapes to Engineer an Improved Fluorescent Rhodopsin Chloride Sensor.

Authors:  Hsichuan Chi; Qin Zhou; Jasmine N Tutol; Shelby M Phelps; Jessica Lee; Paarth Kapadia; Faruck Morcos; Sheel C Dodani
Journal:  ACS Synth Biol       Date:  2022-04-07       Impact factor: 5.249

7.  Neurophotonic tools for microscopic measurements and manipulation: status report.

Authors:  Ahmed S Abdelfattah; Sapna Ahuja; Taner Akkin; Srinivasa Rao Allu; Joshua Brake; David A Boas; Erin M Buckley; Robert E Campbell; Anderson I Chen; Xiaojun Cheng; Tomáš Čižmár; Irene Costantini; Massimo De Vittorio; Anna Devor; Patrick R Doran; Mirna El Khatib; Valentina Emiliani; Natalie Fomin-Thunemann; Yeshaiahu Fainman; Tomas Fernandez-Alfonso; Christopher G L Ferri; Ariel Gilad; Xue Han; Andrew Harris; Elizabeth M C Hillman; Ute Hochgeschwender; Matthew G Holt; Na Ji; Kıvılcım Kılıç; Evelyn M R Lake; Lei Li; Tianqi Li; Philipp Mächler; Evan W Miller; Rickson C Mesquita; K M Naga Srinivas Nadella; U Valentin Nägerl; Yusuke Nasu; Axel Nimmerjahn; Petra Ondráčková; Francesco S Pavone; Citlali Perez Campos; Darcy S Peterka; Filippo Pisano; Ferruccio Pisanello; Francesca Puppo; Bernardo L Sabatini; Sanaz Sadegh; Sava Sakadzic; Shy Shoham; Sanaya N Shroff; R Angus Silver; Ruth R Sims; Spencer L Smith; Vivek J Srinivasan; Martin Thunemann; Lei Tian; Lin Tian; Thomas Troxler; Antoine Valera; Alipasha Vaziri; Sergei A Vinogradov; Flavia Vitale; Lihong V Wang; Hana Uhlířová; Chris Xu; Changhuei Yang; Mu-Han Yang; Gary Yellen; Ofer Yizhar; Yongxin Zhao
Journal:  Neurophotonics       Date:  2022-04-27       Impact factor: 4.212

8.  Unique Cl- pump rhodopsin with close similarity to H+ pump rhodopsin.

Authors:  Takashi Kikukawa
Journal:  Biophys Physicobiol       Date:  2021-12-22

Review 9.  Emerging Diversity of Channelrhodopsins and Their Structure-Function Relationships.

Authors:  Elena G Govorunova; Oleg A Sineshchekov; John L Spudich
Journal:  Front Cell Neurosci       Date:  2022-01-24       Impact factor: 5.505

10.  The Photoreaction of the Proton-Pumping Rhodopsin 1 From the Maize Pathogenic Basidiomycete Ustilago maydis.

Authors:  Mariafrancesca La Greca; Jheng-Liang Chen; Luiz Schubert; Jacek Kozuch; Tim Berneiser; Ulrich Terpitz; Joachim Heberle; Ramona Schlesinger
Journal:  Front Mol Biosci       Date:  2022-02-25
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