| Literature DB >> 34342293 |
Ne Lin1, Tao Yu2, Wenfang Zheng1,3,4, Huiyi Hu2, Lijuan Xiang5, Guoliang Ye6, Xingwei Zhong7, Bin Ye8, Rong Wang9, Wanyin Deng10, JingJing Li11, Xiaoyue Wang12, Feng Han13, Kun Zhuang14, Dekui Zhang15, Huanhai Xu16, Jin Ding17, Xu Zhang2, Yuqin Shen1, Hai Lin18, Zhe Zhang19, John J Kim20, Jiquan Liu2, Weiling Hu1,3,4, Huilong Duan2, Jianmin Si1,3,4.
Abstract
INTRODUCTION: Patients with atrophic gastritis (AG) or gastric intestinal metaplasia (GIM) have elevated risk of gastric adenocarcinoma. Endoscopic screening and surveillance have been implemented in high incidence countries. The study aimed to evaluate the accuracy of a deep convolutional neural network (CNN) for simultaneous recognition of AG and GIM.Entities:
Mesh:
Year: 2021 PMID: 34342293 PMCID: PMC8337066 DOI: 10.14309/ctg.0000000000000385
Source DB: PubMed Journal: Clin Transl Gastroenterol ISSN: 2155-384X Impact factor: 4.488
Figure 1.(a) The architecture of TResNet used for training the multilabel gastric lesion classification model. It is composed of Stem Design, blocks of residual structure, GAP with a FC. Normal represents gastric mucosa without lesions of atrophy and intestinal metaplasia. (b) The structure of stem Design of model entrance in (a). It consists of SpaceToDepth transformer block to reduce the loss of information and 1 × 1 convolutional layers to adjust channels. (c) The fundamental building structure of Basic Block in (a). It consists of convolutional layers, Inplace Activated Batch Normalization operations, Nonlinear Leaky ReLU activation functions, SE attention Block, and skip connections. (d) The Bottleneck Block of the experiment in the study, which had similar structure with Basic Blocks but equipped with 1 × 1 Convolutional layer to enhance GPU. AG, atrophic gastritis; FC, fully connected layer; GAP, Global Average Pooling; GIM, gastric intestinal metaplasia; GPU, graphics processing unit usage.
Figure 2.The workflow of the experiment in the study.
Figure 5.ROC for AG and GIM of optimized CNN model and 3 expert endoscopists, separately. AG, atrophic gastritis; CNN, convolutional neural network; GIM, gastric intestinal metaplasia; ROC, receiver operating curve.
Figure 3.Workflow diagram for data collection, screening, annotation, development and evaluation of AG, GIM and CNAG. AG, atrophic gastritis; CNAG, chronic nonatrophic gastritis; GIM, gastric intestinal metaplasia.
Clinical characteristics of included patients
| Patients, n | ||||
| Characteristic | All | Training | Validation | Testing |
| Total | 2,741 | 2,193 | 275 | 273 |
| Age, yrs (SD) | 52.0 (13.2) | 52.2 (13.1) | 51.3 (13.9) | 51.6 (13.7) |
| Male patients (%) | 1,387 (50.6) | 1,120 (51.0) | 132 (48.0) | 135 (49.3) |
Summary of multilabel classification performance for architecture obtained by 5-fold cross-validation
| Cross-validation folds | Atrophic gastritis | Intestinal metaplasia |
| Accuracy (%) | Accuracy (%) | |
| 1 | 96.4 (94.4–97.8) | 97.6 (95.8–98.6) |
| 2 | 96.5 (95.0–97.7) | 97.4 (96.1–98.4) |
| 3 | 96.1 (94.4–97.5) | 97.1 (95.5–98.2) |
| 4 | 95.8 (93.8–97.4) | 97.4 (95.7–98.6) |
| 5 | 96.4 (94.2–97.9) | 96.3 (93.9–97.9) |
| Average | 96.24 | 97.16 |
Diagnostic characteristic of gastric image by different anatomic location
| Characteristic | All, N = 548 (95% CI) | Antrum, N = 392 (95% CI) | Angularis, N = 127 (95% CI) | Fundus/corpus, N = 29 (95% CI) |
| Atrophic gastritis[ | ||||
| Accuracy (%) | 96.36 (94.4–97.8) | 95.9 (93.5–97.7) | 98.4 (94.4–99.8) | 93.1 (77.2–99.1) |
| Sensitivity (%) | 96.15 (94.21–97.62) | 95.1 (92.2–96.9) | 100 (97.1–100) | 100 (88.1–100) |
| Specificity (%) | 96.44 (94.8–97.9) | 96.4 (94.1–98.0) | 97.8 (93.2–99.5) | 96.6 (82.2–99.9) |
| AUC | 0.983 (0.967–0.991) | 0.981 (0.960–0.991) | 0.988 (0.944–0.99) | 0.987 (0.989–1.00) |
| Intestinal metaplasia[ | ||||
| Accuracy (%) | 97.6 (95.8–98.6) | 97.7 (95.7–98.9) | 97.6 (93.2–99.5) | 96.6 (82.2–99.9) |
| Sensitivity (%) | 97.9 (96.2–98.9) | 98.6 (96.7–99.4) | 97.5 (93.2–99.5) | 80 (60.3–92.0) |
| Specificity (%) | 97.5 (95.8–98.6) | 97.2 (95.0–98.6) | 97.7 (94.4–99.8) | 100 (88.1–1) |
| AUC | 0.990 (0.976–0.996) | 0.990 (0.974–0.997) | 0.998 (95.7–1.00) | 1.00 (0.881–1.00) |
AUC, area under curve; CI, confidence interval.
Optimal accuracy, sensitivity, and specificity using optimal cutoff using 0.47.
Optimal accuracy, sensitivity, and specificity using optimal cutoff using 0.16.
Figure 4.CNN-derived visualization technology localizing of (a) AG and (b) AG and GIM. The red regions of heat maps are most suspicious area evaluated by the CNN model. AG, atrophic gastritis; CNN, convolutional neural network; GIM, gastric intestinal metaplasia.