Literature DB >> 34339378

VoxelHop: Successive Subspace Learning for ALS Disease Classification Using Structural MRI.

Xiaofeng Liu, Fangxu Xing, Chao Yang, Chung-Chieh Jay Kuo, Suma Babu, Georges El Fakhri, Thomas Jenkins, Jonghye Woo.   

Abstract

Deep learning has great potential for accurate detection and classification of diseases with medical imaging data, but the performance is often limited by the number of training datasets and memory requirements. In addition, many deep learning models are considered a "black-box," thereby often limiting their adoption in clinical applications. To address this, we present a successive subspace learning model, termed VoxelHop, for accurate classification of Amyotrophic Lateral Sclerosis (ALS) using T2-weighted structural MRI data. Compared with popular convolutional neural network (CNN) architectures, VoxelHop has modular and transparent structures with fewer parameters without any backpropagation, so it is well-suited to small dataset size and 3D imaging data. Our VoxelHop has four key components, including (1) sequential expansion of near-to-far neighborhood for multi-channel 3D data; (2) subspace approximation for unsupervised dimension reduction; (3) label-assisted regression for supervised dimension reduction; and (4) concatenation of features and classification between controls and patients. Our experimental results demonstrate that our framework using a total of 20 controls and 26 patients achieves an accuracy of 93.48 % and an AUC score of 0.9394 in differentiating patients from controls, even with a relatively small number of datasets, showing its robustness and effectiveness. Our thorough evaluations also show its validity and superiority to the state-of-the-art 3D CNN classification approaches. Our framework can easily be generalized to other classification tasks using different imaging modalities.

Entities:  

Mesh:

Year:  2022        PMID: 34339378      PMCID: PMC8807766          DOI: 10.1109/JBHI.2021.3097735

Source DB:  PubMed          Journal:  IEEE J Biomed Health Inform        ISSN: 2168-2194            Impact factor:   7.021


  30 in total

Review 1.  Voxel-based morphometry--the methods.

Authors:  J Ashburner; K J Friston
Journal:  Neuroimage       Date:  2000-06       Impact factor: 6.556

2.  Diffeomorphic demons: efficient non-parametric image registration.

Authors:  Tom Vercauteren; Xavier Pennec; Aymeric Perchant; Nicholas Ayache
Journal:  Neuroimage       Date:  2008-11-07       Impact factor: 6.556

3.  Differentiating post-cancer from healthy tongue muscle coordination patterns during speech using deep learning.

Authors:  Jonghye Woo; Fangxu Xing; Jerry L Prince; Maureen Stone; Jordan R Green; Tessa Goldsmith; Timothy G Reese; Van J Wedeen; Georges El Fakhri
Journal:  J Acoust Soc Am       Date:  2019-05       Impact factor: 1.840

Review 4.  Imaging in amyotrophic lateral sclerosis: MRI and PET.

Authors:  Jan Kassubek; Marco Pagani
Journal:  Curr Opin Neurol       Date:  2019-10       Impact factor: 5.710

5.  Amyotrophic lateral sclerosis: abnormalities of the tongue on magnetic resonance imaging.

Authors:  C H Cha; B M Patten
Journal:  Ann Neurol       Date:  1989-05       Impact factor: 10.422

Review 6.  25 years of neuroimaging in amyotrophic lateral sclerosis.

Authors:  Bradley R Foerster; Robert C Welsh; Eva L Feldman
Journal:  Nat Rev Neurol       Date:  2013-08-06       Impact factor: 42.937

7.  Magnetic resonance imaging based anatomical assessment of tongue impairment due to amyotrophic lateral sclerosis: A preliminary study.

Authors:  Euna Lee; Fangxu Xing; Sung Ahn; Timothy G Reese; Ruopeng Wang; Jordan R Green; Nazem Atassi; Van J Wedeen; Georges El Fakhri; Jonghye Woo
Journal:  J Acoust Soc Am       Date:  2018-04       Impact factor: 1.840

8.  Structural changes induced by daily music listening in the recovering brain after middle cerebral artery stroke: a voxel-based morphometry study.

Authors:  Teppo Särkämö; Pablo Ripollés; Henna Vepsäläinen; Taina Autti; Heli M Silvennoinen; Eero Salli; Sari Laitinen; Anita Forsblom; Seppo Soinila; Antoni Rodríguez-Fornells
Journal:  Front Hum Neurosci       Date:  2014-04-17       Impact factor: 3.169

Review 9.  3D Deep Learning on Medical Images: A Review.

Authors:  Satya P Singh; Lipo Wang; Sukrit Gupta; Haveesh Goli; Parasuraman Padmanabhan; Balázs Gulyás
Journal:  Sensors (Basel)       Date:  2020-09-07       Impact factor: 3.576

10.  Accurate brain age prediction with lightweight deep neural networks.

Authors:  Han Peng; Weikang Gong; Christian F Beckmann; Andrea Vedaldi; Stephen M Smith
Journal:  Med Image Anal       Date:  2020-10-19       Impact factor: 8.545

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