| Literature DB >> 34337092 |
Lisa Staadegaard1, Saverio Caini1, Sonam Wangchuk2, Binay Thapa2, Walquiria Aparecida Ferreira de Almeida3, Felipe Cotrim de Carvalho3, Richard Njouom4, Rodrigo A Fasce5, Patricia Bustos6, Jan Kyncl7,8, Ludmila Novakova9, Alfredo Bruno Caicedo10,11, Domenica Joseth de Mora Coloma10, Adam Meijer12, Mariëtte Hooiveld1, Sue Huang13, Tim Wood13, Raquel Guiomar14, Ana Paula Rodrigues14, Daria Danilenko15, Kirill Stolyarov15, Vernon Jian Ming Lee16,17, Li Wei Ang16,18, Cheryl Cohen19,20, Jocelyn Moyes19,20, Amparo Larrauri21, Concepción Delgado-Sanz21, Mai Quynh Le22, Phuong Vu Mai Hoang22, Clarisse Demont23, Mathieu Bangert23, Jojanneke van Summeren1, Michel Dückers1,24,25, John Paget1.
Abstract
BACKGROUND: Respiratory syncytial virus (RSV) is one of the leading causes of acute respiratory tract infections. To optimize control strategies, a better understanding of the global epidemiology of RSV is critical. To this end, we initiated the Global Epidemiology of RSV in Hospitalized and Community care study (GERi).Entities:
Keywords: epidemiology: RSV; respiratory infections; surveillance
Year: 2021 PMID: 34337092 PMCID: PMC8320297 DOI: 10.1093/ofid/ofab159
Source DB: PubMed Journal: Open Forum Infect Dis ISSN: 2328-8957 Impact factor: 3.835
Description of the RSV Surveillance Systems by Level of Care (eg, Mix, Community, or Hospitalized Care) of the 15 Participating Countries on the Basis of a Questionnaire
| Care Levela | Regional Stratification | Timing | Type of Surveillance | Care Level Definition | Case Definition | Methods Detection | Representativeness | |
|---|---|---|---|---|---|---|---|---|
| Cameroon | Mix | No | Year round | Sentinel surveillance system in outpatient and hospitalized patients | NA | Outpatient: ILIHospitalized: SARI | Real-time RT-PCR | Data from 6 different regions out of 10 |
| Portugal | Mix | Yes | Seasonal (~weeks 40–18) | Nonsentinel, laboratory surveillance# | Outpatients & hospitalized patients | None | Real-time RT-PCR + antigen detection | No hospitals in the southern region |
| United States of America | Mix | Yes | Year round | Passive national laboratory surveillance (NREVSS) | NA | NA | NA | 10 HHS regions, with data from >500 state and local public health laboratories, commercial labs, and hospitals/universities |
| The Czech Republic | Community care | No | Seasonal (weeks 40–20) | Sentinel surveillance | GPs for adults and GPs for children | ILI/ARI | Antigen detection, virus isolation, and other; Biomerieaux | 0.37% of GPs and all regions are covered |
| The Netherlands | Community care | No | Year round | Sentinel surveillance—subset of patients; at least 2 per week and GP sentinel practice, 1 of which should be a child age <10 | GPs in a sentinel network | ILI/ARI | Real-time RT-PCR | 0.8% of the Dutch population |
| New Zealand | Community care | No | Seasonal (~weeks 18–40) | Sentinel surveillance—subset of patients: all ILIs in Auckland and Wellington and the first patient with ILI from Monday to Wednesday for the rest of NZ | GP-based surveillance | ILI | Real-time RT-PCR: US CDC protocol | 80–90 GP practices covering the whole of NZ; previously (<2015) only Auckland region was included |
| Portugal | Community care | Yes | Seasonal (~weeks 40–18) | Sentinel surveillance+ | GP at health care centers or patients attending at emergency rooms | ILI | Real-time RT-PCR | All regions |
| Russian Federation | Community care | Yes | Year round | Sentinel surveillance | Patients attended a polyclinic | ILI | Multiplex PCR | Facilities in 10 cities, each in every federal district; this population compromises 16.2% of the population |
| Singapore | Community care | No | Year round | Sentinel surveillance+ | Government-funded primary clinics (20) & private GPs (30) covering all regions of the country | ARI + fever ≥38°C and cough | Antigen detection, gel-based RT-PCR, or multiplex syndromic panels | All regions are covered |
| South Africa | Community care | No | Year round | Sentinel surveillance# | Primary health care clinic in the community | ILI | Real-time RT-PCR assay, Fast Track Diagnostics Flu/RSV | Conducted at 2 clinics in the country |
| Bhutan | Hospitalized care | Yes | Year round | Sentinel surveillance# | Hospitalized patients | SARI | Real-time RT-PCR | Nationally |
| Brazilb | Hospitalized care | Yes | NA | NA | NA | NA | NA | NA |
| Chile | Hospitalized care | No | Year round | Sentinel surveillance# | Cases are in hospitalized patients, may consult at ER | SARI | Immunofluorescence assay or RT-PCR | Cities located in regions with the highest proportion of the population (80%) |
| The Czech Republic | Hospitalized care | No | Seasonal (weeks 40–20) | Nonsentinel/routinely—subset: ~500–700 swabs each epidemic season | Local (district) hospitals and regional hospitals + university hospitals | NA | Antigen detection, virus isolation, and other; Biomerieaux | All regions |
| Ecuador | Hospitalized care | No | Year round | Sentinel surveillance# | National sentinel surveillance hospitals | SARI | Antigen detection | Nationally |
| Spainb | Hospitalized care | No | NA | NA | NA | NA | NA | NA |
| The Netherlands | Hospitalized care | No | Year round | Passive national laboratory surveillance (virologische weekstaten) | Testing requested by GPs, clinical | NA | Rapid antigen test, PCR | 14–21 laboratories across the Netherlands, covering 29%–44% of the population |
| New Zealand | Hospitalized care | No | Seasonal (~weeks 18–40) | Sentinel surveillance# | Hospital-based surveillance + ICU | SARI | Real-time RT-PCR | 4 hospitals in Auckland (20% of NZ population) |
| Russian Federation | Hospitalized care | Yes | Year round | Sentinel surveillance# | Hospitalized patients (special infectious disease hospitals) | SARI | Multiplex PCR | 10 cities, each in every federal district; this population compromises 16.2% of the population |
| Singapore | Hospitalized care | No | Year round | NA | Two pediatric departments in public acute care hospitals | SARI | Antigen detection, gel-based RT-PCR or multiplex syndromic panels | All regions are covered |
| Vietnam | Hospitalized care | No | Year round | NA | Hospitalized patients | SARI | Gel-based RT-PCR | North of Vietnam only |
| South Africa | Hospitalized care | No | Year round | Sentinel surveillance system# | Hospitalized care & tertiary care facilities | SARI (>5-y), LRTI (>2 d–<5 y) | Real-time RT-PCR assay, Fast Track Diagnostics Flu/RSV | Conducted at 7 hospitals in 5 out of 9 provinces |
Symbols: #, surveillance aimed at testing all patients fitting the case definition reporting to the included facilities; +, only samples that were negative for influenza were tested for RSV.
Abbreviations: ARI, acute respiratory infection; GP, general practitioner; HHS, US Department of Health & Human Services; ICU, intensive care unit; ILI, influenza-like-illness; LRTI, lower respiratory tract infection; NA, not available; NREVSS, the National Respiratory and Enteric Virus Surveillance System (USA); PCR, polymerase chain reaction; RT-PCR, reverse transcription polymerase chain reaction; SARI, severe acute respiratory infection.
aCare level definitions: community care = day-to-day health care usually provided by the first contact within the health care system, hospitalized care = both acute care received in the emergency department or intensive care unit and more specialized consultative health care usually concerning inpatients, mix = a combination of the 2.
bBrazil and Spain did not return the questionnaire.
Summary of Available Surveillance Data of the 15 Participating Countries; Data Are Summarized on a Country Level and Further Specified for Level of Care (eg, Community or Hospitalized)
| Country | Seasons, No. | Subtyped Data, % | Median Cases per Season (IQR) | Care Level | Cases per Season, Median (IQR) | Average % Positive | |
|---|---|---|---|---|---|---|---|
| Africa | South Africa | 10 (2009–2018) | 36 | 604 (524–824) | Community | 81 (80–95) | 6 |
| Hospitalized | 693 (515–824) | 14 | |||||
| Cameroon | 1 (2018–2019) | 0 | 22 | Community | 22 | 13 | |
| Hospitalized | NA | NA | |||||
| Americas | United States of America | 14 (2005/2006–2018/2019) | 0 | 18 007 (5510–37 834) | Community | NA | NA |
| Hospitalized | NA | NA | |||||
| Chile | 7 (2012–2018) | 0 | 4923 (4846–5490) | Community | 138 (124–146) | 8 | |
| Hospitalized | 4773 (4722–5361) | 17 | |||||
| Ecuador | 7 (2012–2018) | 0 | 482 (365–615) | Community | NA | NA | |
| Hospitalized | 482 (365–615) | 13 | |||||
| Brazil | 5 (2014–2018) | 0 | 2208 (1337–2520) | Community | NA | NA | |
| Hospitalized | 2208 (1337–2520) | NA | |||||
| Europe | Portugal | 8 (2011/2012–2018/2019) | 14 | 529 (247–783) | Community | 13 (7–13) | 4 |
| Hospitalized | NA | NA | |||||
| The Netherlands | 19 (2000/2001–2018/2019) | 100 | 1980 (1766–2219) | Community | 73 (53–98) | 4 | |
| Hospitalized | 1959 (1732–2195) | NA | |||||
| The Czech Republic | 4 (2014/2015–2017/2018) | 3 | 233 (202–345) | Community | 22 (17–26) | 4 | |
| Hospitalized | 213 (189–319) | 3 | |||||
| Spain | 13 (2006/2007–2018/2019) | 0 | 2060 (1638–2969) | Community | NA | NA | |
| Hospitalized | 2060 (1638–2969) | 13 | |||||
| Russian Federation | 5 (2014/2015–2018/2019) | 0 | 133 (104–176) | Community | 66 (48–88) | 4 | |
| Hospitalized | 67 (56–78) | 6 | |||||
| South East Asia | Bhutan | 3 (2015/2016–2017/2018) | 0 | 98 (82–218) | Community | NA | NA |
| Hospitalized | 41 (33.5–64) | 38 | |||||
| Western Pacific | Singapore | 8 (2011–2018) | 4 | 1786 (1647–2076) | Community | 90 (75–105) | 7 |
| Hospitalized | 1710 (1574–1968) | 10 | |||||
| New Zealand | 6 (2013–2018) | 39 | 610 (533–682) | Community | 101 (82–128) | 7 | |
| Hospitalized | 466 (450–566) | 16 | |||||
| Vietnam | 2 (2017–2018) | 0 | 39 (26–41) | Community | 39 (26–41) | 10 | |
| Hospitalized | NA | NA | |||||
| Average | Average | 7 |
| 1463 (512–2335) | Community | 78 (37–110) | 8 |
| Hospitalized | 747 (435–1807) | 17 |
Abbreviations: IQR, interquartile range; NA, not available.
Number of Cases, Median Age, and Age Distribution Expressed as a Relative Illness Ratio of RSV Cases per Country
| No. of Cases | Median Age (IQR), y | Age Category | |||||||
|---|---|---|---|---|---|---|---|---|---|
| <1 y | 1–4 y | ≥5 y | No. of Years | ||||||
| No. of Cases | Median RIR (IQR) | No. of Cases | Median RIR (IQR) | No. of Cases | Median RIR (IQR) | ||||
| Bhutan | 320 | 1.00 (0.42–2.00) | 156 | 28.5 (22.4–29.8) | 125 | 5.6 (4.8–6.5) | 39 | 0.1 (0.1–0.1) | 3 |
| Cameroon | 35 | 1.00 (0.33–4.50) | 15 | NA | 11 | NA | 9 | NA | 0 |
| Chile | 358 | 0.92 (0.42–1.00) | 189 | 42.8 (42.6–43.1) | 137 | 7.3 (7.1–7.6) | 32 | 0.1 (0.1–0.1) | 2 |
| The Czech Republic | 141 | 6.00 (3.00–43.00) | 13 | NA | 46 | NA | 82 | NA | 0 |
| Ecuador | 3361 | 0.58 (0.25–1.00) | 2179 | 31.7 (29.0–33.1) | 1051 | 4.0 (3.8–4.6) | 131 | 0.0 (0.0–0.1) | 7 |
| The Netherlands | 975 | 14.82 (1.64–55.66) | 157 | 14.3 (11.9 –18.2) | 253 | 6.2 (5.8–7.0) | 565 | 0.6 (0.5–0.6) | 13 |
| New Zealand | 3996 | 1.00 (0.25–5.17) | 1992 | 38.4 (35.8–44.5) | 994 | 4.6 (4.0–5.0) | 1010 | 0.3 (0.1–0.3) | 7 |
| Russian Federation | 781 | 3.00 (1.00–8.00) | 160 | 13.8 (6.7–16.5) | 371 | 9.4 (9.0–9.5) | 250 | 0.4 (0.3–0.4) | 6 |
| South Africa | 6646 | 0.51 (0.21–1.53) | 4416 | 28.9 (16.5–35.0) | 1385 | 2.4 (2.3–2.5) | 845 | 0.1 (0.1–0.2) | 10 |
| Vietnam | 78 | 2.00 (1.50–4.00) | 10 | NA | 50 | NA | 18 | NA | 0 |
| Countries With Information on Age Provided Only in Categories | <5 y | ≥5 y | No. of Years | ||||||
| No. of Cases | Median RIR (IQR) | No. of Cases | Median RIR (IQR) | ||||||
| Brazil | 11 460 | <2 y# | NA | NA | 10 318 | 12.7 (12.6–12.7) | 1142 | 0.1 (0.1–0.1) | 5 |
| Portugal | 4902 | 0–4 | NA | NA | 2973 | 7.3 (0.7–18.6) | 1859 | 0.4 (0.2–0.6) | 7 |
| Singapore | 716 | 1–2 | NA | NA | 523 | 18.6 (18.1–19.9) | 193 | 0.3 (0.1–0.3) | 8 |
Symbol: #, median age category, as exact ages were not available.
Abbreviations: IQR, interquartile range; NA, not available; RIR, relative illness ratio; RSV, respiratory syncytial virus.
Figure 1.A–B, Number of RSV cases per month in the <1-year-old age category in community and hospitalized care. “Age, mo” on the x-axis refers to the age of the child. The overall number of cases in the <1-year-old category was taken to calculate the proportion of cases in a given month. Abbreviation: RSV, respiratory syncytial virus.
Figure 2.Proportion of RSV A & B cases per season (n = 34; seasons ordered by increasing proportion RSV A) among subtyped results. Countries included were the Netherlands, New Zealand, Portugal, South Africa, and Singapore, and data from both community and hospitalized care are combined. Proportion distribution was calculated by country for all included seasons. The dark line in the middle indicates the median proportion of both RSV A and B per season, and the dark lines on the left and right indicate the interquartile range. Abbreviation: RSV, respiratory syncytial virus.