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Literature DB >> 34332653

Profiling selective binding to promoter CpG islands by a single-DNA mechanical footprinting assay.

Wenmao Huang¹, Jie Yan².

Abstract

Entities: Chemical

Mesh：

Substances：
DNA

Year: 2021 PMID： 34332653 PMCID： PMC8392115 DOI： 10.1016/j.bpj.2021.07.010

Source DB: PubMed Journal: Biophys J ISSN： 0006-3495 Impact factor: 3.699

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References

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10 in total

1. Probing protein-DNA interactions by unzipping a single DNA double helix.

Authors: Steven J Koch; Alla Shundrovsky; Benjamin C Jantzen; Michelle D Wang
Journal: Biophys J Date: 2002-08 Impact factor: 4.033

2. A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters.

Authors: Serge Saxonov; Paul Berg; Douglas L Brutlag
Journal: Proc Natl Acad Sci U S A Date: 2006-01-23 Impact factor: 11.205

3. DNA Sequence Recognition of Human CXXC Domains and Their Structural Determinants.

Authors: Chao Xu; Ke Liu; Ming Lei; Ally Yang; Yanjun Li; Timothy R Hughes; Jinrong Min
Journal: Structure Date: 2017-12-21 Impact factor: 5.006

4. High-throughput, high-force probing of DNA-protein interactions with magnetic tweezers.

Authors: Bojk A Berghuis; Mariana Köber; Theo van Laar; Nynke H Dekker
Journal: Methods Date: 2016-03-30 Impact factor: 3.608

Review 5. Single-molecule manipulation quantification of site-specific DNA binding.

Authors: Xiaodan Zhao; Shiwen Guo; Chen Lu; Jin Chen; Shimin Le; Hongxia Fu; Jie Yan
Journal: Curr Opin Chem Biol Date: 2019-10-31 Impact factor: 8.822

Review 6. Cancer genome landscapes.

Authors: Bert Vogelstein; Nickolas Papadopoulos; Victor E Velculescu; Shibin Zhou; Luis A Diaz; Kenneth W Kinzler
Journal: Science Date: 2013-03-29 Impact factor: 47.728

Profiling selective binding to promoter CpG islands by a single-DNA mechanical footprinting assay.

1. Probing protein-DNA interactions by unzipping a single DNA double helix.

2. A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters.

3. DNA Sequence Recognition of Human CXXC Domains and Their Structural Determinants.

4. High-throughput, high-force probing of DNA-protein interactions with magnetic tweezers.

Review 5. Single-molecule manipulation quantification of site-specific DNA binding.

Review 6. Cancer genome landscapes.

7. DNA residence time is a regulatory factor of transcription repression.

8. Dynamics and inhibition of MLL1 CXXC domain on DNA revealed by single-molecule quantification.

9. Single molecule high-throughput footprinting of small and large DNA ligands.

10. Single-molecule multiplexed profiling of protein-DNA complexes using magnetic tweezers.