| Literature DB >> 34330278 |
Kinshuk Sengupta1,2,3, Praveen Ranjan Srivastava4,5.
Abstract
BACKGROUND: In medical diagnosis and clinical practice, diagnosing a disease early is crucial for accurate treatment, lessening the stress on the healthcare system. In medical imaging research, image processing techniques tend to be vital in analyzing and resolving diseases with a high degree of accuracy. This paper establishes a new image classification and segmentation method through simulation techniques, conducted over images of COVID-19 patients in India, introducing the use of Quantum Machine Learning (QML) in medical practice.Entities:
Keywords: Artificial intelligence; Medical imaging and analysis; Medical informatics; Quantum neural networks
Mesh:
Year: 2021 PMID: 34330278 PMCID: PMC8323083 DOI: 10.1186/s12911-021-01588-6
Source DB: PubMed Journal: BMC Med Inform Decis Mak ISSN: 1472-6947 Impact factor: 2.796
Empirical research for detecting COVID-19 using deep learninga
| Model proposed | Study | Dataset size | Training samples sufficiency | Model performance |
|---|---|---|---|---|
| MODE (Multi-objective differential evolution) based CNN | Singh et al. [ | 1000 + CT images | + + + | Accuracy—90.6% |
| UNET + + | Chen et al. [ | 46,000 + CT images | + + + | Accuracy—95.24% Sensitivity—100% Specificity—93.55% |
| Stacked Two CNN three dimensional for classification and VNET for Segmentation | Xu et al. [ | 19,000 + CT Images with COVID-19, 1175 healthy samples | + + + | Accuracy—86.70% |
| COVNet + ResNet 50 for classification and U-Net for segmentation | Li et al. [ | 4000 + CT Samples | + + + | Sensitivity—90.0% Specificity—96.0% |
| Transfer Learning + ResNet 50 for classification and UNet + + (3D) for segmentation | Jin et al. [ | 1100 + total samples with 730 positive samples | + + | AUC—0.991 Sensitivity—97.4% Specificity—92.2% |
| Inception with Transfer Learning technique | Wang et al. [ | 450 + CT scans of confirmed COVID-19 | + | Accuracy—82.9% Sensitivity—84.0% Specificity—80.5% |
| Neural Networks with ResNET 50, attention technique and Feature Pyramid Network | Song et al. [ | 750 + Images | + | Accuracy—86.0% F-Score—87.0% Sensitivity—93.0% |
| Deep Conv Net(2D) on ResNet-50 for classification and UNet for segmentation | Gozes et al. [ | 50 + patients’ samples | + | AUC—0.996 Sensitivity—98.2% Specificity—92.2% |
VBNet neural network to Segment COVID-19 infection regions in CT scans | Shan et al. [ | 200 + CT scan samples | + | Dice Coef.—91.6% |
| 2D CNN | Jin et al. [ | 970 CT Scan samples | + | Accuracy—94.0% AUC—0.979 |
| SVM + Wavelet transformation | Barstugan et al. [ | 150 CT Scan Samples | + | Accuracy—99.68% |
| Deep CNN(3D) for classification and U-Net for segmentation | Zheng et al. [ | 500 + Samples | + | AUC-ROC—0.959 |
| DCNN | Heinrich et al. [ | 500 + Samples | + | Dice Coef.—71.0% |
| CNN-LSTM | Islam et al. [ | 4000 + X-ray Samples | + + + | AUC—0.992 Sensitivity—99.3% Specificity—98.9% |
| VGG-19-RNN | Zabirul Islam et al. [ | 6000 + x-ray samples(sample with CoViD, pneumonia and normal cases) | + + + | Accuracy—99.9% AUC—99.9% Recall -99.8% |
| Ensemble DCCNs | Singh [ | 6000 + (sample with CoViD, tuberculosis, pneumonia) | + + + | Accuracy—99.2% |
aRefer to Abbreviations for detailed nomenclature
Previously studied applications of machine learning in drug discovery and medical diagnosis
| Description of study | Author | Methodsa |
|---|---|---|
| Skin cancer detection | Kadampur and Al Riyaee [ | DNN |
| Protein structure prediction | Torrisi et al. [ | DL-CNN, DL-RNN |
| Cuneiform Dehydration Method for Medical Diagnosis | Baranov [ | Image Filtering, thresholding, Gaussian blur |
| Quantitative structure–activity relationship analysis in drug discovery | Uesawa [ | Deep learning |
| Quantum chemical properties analysis | Gilmer et al. [ | Message passing neural network (MPNN) |
| Predicting compound property and activity | Mayr et al. [ | Multitask DNN |
| Predicting pharmacological properties of drugs and for drug repurposing leveraging transcriptomic data from the LINCS project | Aliper et al. [ | DNN |
| Automatic molecular structure learning | Merkwirth and Lengauer [ Lusci et al. [ | DNN and RNN |
| Method to model drug induced liver injury (DILI) | Xu et al. [ | UGRNN |
| Neural fingerprints of the compound | Duvenaud et al. [ | Graph CNN |
| Predicting the ligand–protein interactions | Gomes et al. [ | CNN, DNN |
| Predicting the reactions and retrosynthetic analysis | Liu et al. [ | Neural sequence to sequence model and Monte-Carlo tree search |
| Drug discovery with on short learning | Altae-Tran et al. [ | LSTM |
| Visual Screening from protein–ligand complex | Pereira et al. [ | DNN |
| Facilitating probe selection for gene-expression arrays | Tobler et al. [ | Naïve Bayes, neural nets |
aRefer to Abbreviations for detailed nomenclature
Fig. 1Execution block diagram of classical machine learning/deep learning versus quantum machine learning algorithm designing (refer to Table 4. for algorithmic details on QML)
Dataset
| Dataset description | Data statistics | Source |
|---|---|---|
| CT scans for COVID-19 | 349 CT images of 216 patients | |
| SIRM COVID-19 database | Sample < 50 images | |
| Radiopedia COVID dataset | Sample < 50 images | |
| Eurorad dataset | Sample < 50 images | |
| Center for artificial intelligence in medicine and imaging | More than 5000 + sample images of patients | |
| Total samples selected | ~ 10,000 + |
Fig. 2a QNN Architecture [31]. b The proposed model
Algorithm design stages for quanvolutional neural network
| Stage 1: An input image with small region of interest is embedded into a quantum circuit. An example of a 2 × 22 × 2 square region |
| Stage 2: A quantum computation, associated with a unitary matrix(Ua) in Fig. |
| Stage 3: The system is then quantified by obtaining the list of classical expected values |
| Stage 4: Similar to the classical convolution layer, each expected value is mapped to a different channel of a single output pixel |
| Stage 5: The process is iteratively executing across different regions of the image. A full input image scan is viable by re-positioning an output object positioned a multi-channel image |
| Stage 6: The quantum convolution layer would additionally abide to quantum or classical layers |
aRefer to Abbreviations for detailed nomenclature
Fig. 3a Sample CT scan image illustrating small to medium patches forming with each week's diagnosis. b Sample CT scan image of CoViD-19 diagnosed
Fig. 4CT scan of two patients of 45-year and 48-years of age with influenza virus pneumonia and Goodpasture syndrome shows bilateral ground-glass opacities in contrast to COVD-19 patients (Hani et al. 2020)
Fig. 5A quantum CNN: hybrid Convolution with multiple quantum filters
Fig. 6A quantum circuit
Fig. 7The circuit from the training samples in the first iteration of the 2-layer circuit
QNN parameter
| Parameter(s) | Value |
|---|---|
| Layer | PQC |
| Output shape | (None, 1) |
| Param | 32 |
| Model | Sequential |
| Loss function | Hinge |
| Optimizer | ADAM |
| Evaluation metrics | Hinge accuracy |
Loss score and hinge accuracy
| Epoch | Loss | Hinge accuracy | Validation loss | Val hinge accuracy |
|---|---|---|---|---|
| 1/10 | 0.6566 | 0.7534 | 0.3870 | 0.8160 |
| 2/10 | 0.3568 | 0.8263 | 0.3348 | 0.8311 |
| 3/10 | 0.3281 | 0.8497 | 0.3269 | 0.8579 |
| 4/10 | 0.2994 | 0.9061 | 0.2894 | 0.8769 |
| 5/10 | 0.2707 | 0.9542 | 0.2594 | 0.8978 |
| 6/10 | 0.2707 | 0.9582 | 0.2293 | 0.9188 |
| 7/10 | 0.2133 | 0.9586 | 0.1993 | 0.9397 |
| 8/10 | 0.1872 | 0.9582 | 0.1692 | 0.9607 |
| 9/10 | 0.1872 | 0.9582 | 0.1692 | 0.9607 |
| 10/10 | 0.1821 | 0.9692 | 0.1691 | 0.9657 |
Confusion matrix
Fig. 8Change in loss per epoch (training and validation)
Fig. 9Comparison of various DL models versus QNN