| Literature DB >> 34329317 |
Donald A Berry1,2, Andrew Ip3,4,5, Brett E Lewis4,5, Scott M Berry1, Nicholas S Berry1, Mary MrKulic4, Virginia Gadalla4, Burcu Sat4, Kristen Wright4, Michelle Serna4, Rashmi Unawane4, Katerina Trpeski4, Michael Koropsak4, Puneet Kaur4, Zachary Sica4, Andrew McConnell4, Urszula Bednarz4, Michael Marafelias4, Andre H Goy4,5, Andrew L Pecora4,5, Ihor S Sawczuk5,6, Stuart L Goldberg3,4,5.
Abstract
OBJECTIVES: The development of a prognostic mortality risk model for hospitalized COVID-19 patients may facilitate patient treatment planning, comparisons of therapeutic strategies, and public health preparations.Entities:
Year: 2021 PMID: 34329317 PMCID: PMC8323891 DOI: 10.1371/journal.pone.0255228
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Results of stepwise proportional hazards modeling in training set to determine factors for inclusion in risk score.
| Factors considered | Percent missing, training set | Step 1 elimi-nated | Step 2 elimi-nation order | Included in Risk Score | LogWorth = –log(p-value) | Coefficient in Risk Score |
|---|---|---|---|---|---|---|
| Age^3 | 0.0 | √ | 27.10 | 4.8939e–6 | ||
| Gender | 0.0 | √ | ||||
| Current or former smoker | 13.2 | 7 | ||||
| Respiratory rate ≥ 25/min | 2.7 | √ | 7.66 | 1.3711 | ||
| Oxygenation <94% sat | 1.4 | √ | 8.69 | 1.1623 | ||
| Asthma | 2.5 | √ | ||||
| COPD | 2.5 | 4 | ||||
| Diabetes | 1.4 | 8 | ||||
| Insulin use | 4.4 | 1 | ||||
| Bradycardia on admission | 1.0 | 5 | ||||
| Hypertension | 1.0 | √ | 1.38 | 0.4736 | ||
| Hypotension on admission | 0.8 | 10 | ||||
| Coronary disease | 2.3 | √ | 2.24 | 0.6362 | ||
| Stroke | 2.3 | 6 | ||||
| Heart failure | 2.6 | 2 | ||||
| Arrhythmia | 2.3 | 11 | ||||
| Cancer | 2.2 | 3 | ||||
| Renal failure | 2.0 | √ | 2.24 | 0.8520 | ||
| Advanced liver disease | 2.8 | √ | ||||
| Rheumatologic disorder | 2.8 | √ | ||||
| HIV or hepatitis | 3.6 | 9 | ||||
| Inflammatory bowel disease | 2.4 | √ |
* 25 breaths/minute chosen as clearest delineator of risk.
** Initial heart rate < 60/min.
*** Initial SBP < 90 mmHg or DBP < 60 mmHg.
Marginal baseline characteristics and outcomes (%).
| Factors | All | Deaths | Alive |
|---|---|---|---|
| Overall | 3123 | 713 (23) | 2410 (77) |
| Race distribution | |||
| African-American | 341 (11) | 65 (19) | 276 (81) |
| Asian | 136 (4) | 35 (26) | 101 (74) |
| Caucasian | 1584 (51) | 424 (27) | 1160 (73) |
| Hispanic | 613 (20) | 114 (19) | 499 (81) |
| Other | 332 (11) | 52 (16) | 280 (84) |
| Missing | 117 (4) | 23 (20) | 94 (80) |
| Age Median (IQR) | 63 (51 to 74) | 76 (66 to 85) | 60 (48 to 71) |
| Age distribution | |||
| 0 to 9 | 11 (<1) | 0 (0) | 11 (100) |
| 10 to 19 | 13 (<1) | 0 (0) | 13 (100) |
| 20 to 29 | 85 (3) | 4 (5) | 81 (95) |
| 30 to 39 | 223 (7) | 6 (3) | 217 (97) |
| 40 to 49 | 377 (12) | 15 (4) | 362 (96) |
| 50 to 59 | 578 (19) | 61 (11) | 517 (89) |
| 60 to 69 | 685 (22) | 148 (22) | 537 (78) |
| 70 to 79 | 582 (19) | 198 (34) | 384 (66) |
| 80 to 89 | 408 (13) | 185 (45) | 223 (55) |
| 90+ | 161 (5) | 96 (60) | 65 (40) |
| Gender | |||
| Female | 1237 | 262 (21) | 975 (79) |
| Male | 1885 | 451 (24) | 1434 (76) |
| Current or former smoker | |||
| Current | 113 | 19 (17) | 94 (83) |
| Former | 539 | 161 (30) | 378 (70) |
| Non-smoker | 2068 | 414 (20) | 1654 (80) |
| Comorbidities and Other Potential Risk Factors | |||
| Respiratory rate ≥ 25/min | |||
| Yes | 373 (13) | 169 (45) | 204 (55) |
| No | 2677 | 524 (20) | 2153 (80) |
| Oxygenation <94% | |||
| Yes | 1270 (41) | 394 (31) | 876 (69) |
| No | 1803 | 304 (17) | 1499 (83) |
| Asthma | |||
| Yes | 276 (9) | 58 (21) | 218 (79) |
| No | 2772 | 637 (23) | 2135 (77) |
| COPD | |||
| Yes | 221 (7) | 91 (41) | 130 (59) |
| No | 2825 | 606 (21) | 2219 (79) |
| Diabetes | |||
| Yes | 943 (31) | 286 (30) | 657 (70) |
| No | 2129 | 418 (20) | 1711 (80) |
| Insulin use | |||
| Yes | 581 (19) | 186 (32) | 395 (68) |
| No | 2414 | 497 (21) | 1917 (79) |
| Bradycardia on admission | |||
| Yes | 62 (12) | 42 (68) | 20 (32) |
| No | 3023 | 678 (22) | 2345 (78) |
| Hypertension | |||
| Yes | 1649 (53) | 527 (32) | 1122 (68) |
| No | 1441 | 181 (13) | 1260 (87( |
| Hypotension on admission | |||
| Yes | 491 (16) | 172 (35) | 319 (65) |
| No | 2603 | 531 (22) | 2072 (78) |
| Coronary disease | |||
| Yes | 448 (15) | 177 (40) | 271 (60) |
| No | 2607 | 518 (20) | 2089 (80) |
| Stroke | |||
| Yes | 145 (5) | 63 (43) | 82 (57) |
| No | 2906 | 632 (22) | 2274 (78) |
| Heart failure | |||
| Yes | 227 (7) | 107 (47) | 120 (53) |
| No | 2816 | 588 (21) | 2228 (79) |
| Arrhythmia | |||
| Yes | 269 (9) | 125 (54) | 144 (54) |
| No | 2779 | 572 (21) | 2207 (79) |
| Cancer | |||
| Yes | 357 (12) | 122 (34) | 235 (66) |
| No | 2699 | 575 (21) | 2124 (79) |
| Renal failure | |||
| Yes | 216 (7) | 101 (47) | 115 (53) |
| No | 2835 | 597 (21) | 2238 (79) |
| Advanced liver disease | |||
| Yes | 26 (1) | 12 (46) | 14 (54) |
| No | 3013 | 678 (23) | 2335 (77) |
| Rheumatologic disorder | |||
| Yes | 89 (3) | 31 (35) | 58 (65) |
| No | 2952 | 663 (22) | 2289 (78) |
| HIV or hepatitis | |||
| Yes | 151 (5) | 38 (25) | 113 (75) |
| No | 2972 | 675 (23) | 2297 (77) |
| Inflammatory bowel disease | |||
| Yes | 25 (1) | 7 (28) | 18 (72) |
| No | 3022 | 687 (23) | 2335 (77) |
| Number of above comorbidities and other potential risk factors | |||
| 0 | 419 (15) | 21 (5) | 398 (95) |
| 1 | 654 (23) | 67 (10) | 587 (90) |
| 2 | 577 (20) | 101 (18) | 476 (82) |
| 3 | 423 (15) | 119 (28) | 304 (72) |
| 4 | 319 (11) | 117 (37) | 202 (63) |
| 5 | 218 (8) | 93 (43) | 125 (57) |
| 6+ | 218 (8) | 118 (54) | 100 (46) |
Fig 1Relationship between age cubed and 40-day mortality.
Cox risk ratios for 1 unit increase in risk score.
| Dataset | Sample size | Number of deaths | Risk Ratio (95% C.I.) | p-value |
|---|---|---|---|---|
| Training | 1561 | 336 | 1.82 (1.72, 1.94) | < 0.0001 |
| Confirmation | 1562 | 377 | 1.77 (1.67, 1.88) | < 0.0001 |
| Combined | 3123 | 713 | 1.80 (1.72, 1.87) | < 0.0001 |
Fig 240-day mortality based on risk score.
40-day mortality among COVID-19 patients in the training and confirmatory sets as divided into bins of 20 patients of ascending mean Risk Scores. Bins 6, 11, and 16 contain 157 patients each and all other bins have 156 patients.
Fig 3Patient mortality risk by day 40 using a proportional hazards model.
Fig 4Patient-specific risk of mortality by day 40 using actual mortality in datasets.