Literature DB >> 34327662

Genomic identification of nitrogen assimilation-related genes and transcriptional characterization of their responses to nitrogen in allotetraploid rapeseed.

Yue Wang1, Ying-Peng Hua1, Ting Zhou1, Jin-Yong Huang1, Cai-Peng Yue2.   

Abstract

BACKGROUND: Nitrogen (N) is an essential macronutrient to maintain plant growth and development. Plants absorb nitrate-N or ammonium-N in the environment and undergo reduction reactions catalyzed by nitrate reductase (NR), nitrite reductase (NIR), glutamine synthetase (GS), and glutamine oxoglutarate aminotransferase (GOGAT) within plants. METHODS AND
RESULTS: A total of 42 N assimilation-related genes (NAG) members were identified in rapeseed. Darwin's evolutionary pressure analysis showed that rapeseed NAGs underwent purification selection. Cis-element analysis revealed differences in the transcriptional regulation of NAGs between Arabidopsis and rapeseed. Expression analyses revealed that NRs were expressed mainly in old leaves, NIRs were expressed mainly in old leaves and lower stem peels, while the expression situation between different subfamilies of GSs and GOGATs was more complicated.
CONCLUSIONS: Differential expression of NAGs suggested that they might be involved in abiotic stresses. The above results greatly enriched our understanding of NAGs' molecular characteristics and provided central gene resources for NAGs-mediated NUE improvement in rapeseed.
© 2021. The Author(s), under exclusive licence to Springer Nature B.V.

Entities:  

Keywords:  Abiotic stresses; Allotetraploid; Genomic identification; Nitrogen assimilation-related genes; Rapeseed

Mesh:

Substances:

Year:  2021        PMID: 34327662     DOI: 10.1007/s11033-021-06599-0

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  38 in total

1.  Identification and characterization of improved nitrogen efficiency in interspecific hybridized new-type Brassica napus.

Authors:  Gaili Wang; Guangda Ding; Ling Li; Hongmei Cai; Xiangsheng Ye; Jun Zou; Fangsen Xu
Journal:  Ann Bot       Date:  2014-07-02       Impact factor: 4.357

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Review 4.  Source and sink mechanisms of nitrogen transport and use.

Authors:  Mechthild Tegeder; Céline Masclaux-Daubresse
Journal:  New Phytol       Date:  2017-11-09       Impact factor: 10.151

Review 5.  Engineering nitrogen use efficient crop plants: the current status.

Authors:  Chandra H McAllister; Perrin H Beatty; Allen G Good
Journal:  Plant Biotechnol J       Date:  2012-05-18       Impact factor: 9.803

Review 6.  Nitrate and hormonal signaling crosstalk for plant growth and development.

Authors:  Andrea Vega; José Antonio O'Brien; Rodrigo A Gutiérrez
Journal:  Curr Opin Plant Biol       Date:  2019-11-11       Impact factor: 7.834

7.  Genotypic differences in nitrate uptake, translocation and assimilation of two Chinese cabbage cultivars [Brassica campestris L. ssp. Chinensis (L.)].

Authors:  Yafang Tang; Xuecheng Sun; Chengxiao Hu; Qiling Tan; Xiaohu Zhao
Journal:  Plant Physiol Biochem       Date:  2013-05-17       Impact factor: 4.270

Review 8.  Cytosolic glutamine synthetase: a target for improvement of crop nitrogen use efficiency?

Authors:  Hanne C Thomsen; Dennis Eriksson; Inge S Møller; Jan K Schjoerring
Journal:  Trends Plant Sci       Date:  2014-07-10       Impact factor: 18.313

9.  Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.

Authors:  Boulos Chalhoub; France Denoeud; Shengyi Liu; Isobel A P Parkin; Haibao Tang; Xiyin Wang; Julien Chiquet; Harry Belcram; Chaobo Tong; Birgit Samans; Margot Corréa; Corinne Da Silva; Jérémy Just; Cyril Falentin; Chu Shin Koh; Isabelle Le Clainche; Maria Bernard; Pascal Bento; Benjamin Noel; Karine Labadie; Adriana Alberti; Mathieu Charles; Dominique Arnaud; Hui Guo; Christian Daviaud; Salman Alamery; Kamel Jabbari; Meixia Zhao; Patrick P Edger; Houda Chelaifa; David Tack; Gilles Lassalle; Imen Mestiri; Nicolas Schnel; Marie-Christine Le Paslier; Guangyi Fan; Victor Renault; Philippe E Bayer; Agnieszka A Golicz; Sahana Manoli; Tae-Ho Lee; Vinh Ha Dinh Thi; Smahane Chalabi; Qiong Hu; Chuchuan Fan; Reece Tollenaere; Yunhai Lu; Christophe Battail; Jinxiong Shen; Christine H D Sidebottom; Xinfa Wang; Aurélie Canaguier; Aurélie Chauveau; Aurélie Bérard; Gwenaëlle Deniot; Mei Guan; Zhongsong Liu; Fengming Sun; Yong Pyo Lim; Eric Lyons; Christopher D Town; Ian Bancroft; Xiaowu Wang; Jinling Meng; Jianxin Ma; J Chris Pires; Graham J King; Dominique Brunel; Régine Delourme; Michel Renard; Jean-Marc Aury; Keith L Adams; Jacqueline Batley; Rod J Snowdon; Jorg Tost; David Edwards; Yongming Zhou; Wei Hua; Andrew G Sharpe; Andrew H Paterson; Chunyun Guan; Patrick Wincker
Journal:  Science       Date:  2014-08-21       Impact factor: 47.728

10.  Bolbase: a comprehensive genomics database for Brassica oleracea.

Authors:  Jingyin Yu; Meixia Zhao; Xiaowu Wang; Chaobo Tong; Shunmou Huang; Sadia Tehrim; Yumei Liu; Wei Hua; Shengyi Liu
Journal:  BMC Genomics       Date:  2013-09-30       Impact factor: 3.969

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