Literature DB >> 34326488

Enhancing the tropism of bacteria via genetically programmed biosensors.

Tiffany Chien1, Tetsuhiro Harimoto1, Benjamin Kepecs1, Kelsey Gray1, Courtney Coker1, Nicholas Hou1, Kelly Pu1, Tamjeed Azad1, Andoni Nolasco1, Martina Pavlicova2, Tal Danino3,4,5.   

Abstract

Engineered bacteria for therapeutic applications would benefit from control mechanisms that confine the growth of the bacteria within specific tissues or regions in the body. Here we show that the tropism of engineered bacteria can be enhanced by coupling bacterial growth with genetic circuits that sense oxygen, pH or lactate through the control of the expression of essential genes. Bacteria that were engineered with pH or oxygen sensors showed preferential growth in physiologically relevant acidic or oxygen conditions, and reduced growth outside the permissive environments when orally delivered to mice. In syngeneic mice bearing subcutaneous tumours, bacteria engineered with both hypoxia and lactate biosensors coupled through an AND gate showed increased tumour specificity. The multiplexing of genetic circuits may be more broadly applicable for enhancing the localization of bacteria to specified niches.
© 2021. The Author(s), under exclusive licence to Springer Nature Limited.

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Year:  2021        PMID: 34326488      PMCID: PMC8956018          DOI: 10.1038/s41551-021-00772-3

Source DB:  PubMed          Journal:  Nat Biomed Eng        ISSN: 2157-846X            Impact factor:   29.234


  82 in total

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Authors:  P Garbeva; J A van Veen; J D van Elsas
Journal:  Annu Rev Phytopathol       Date:  2004       Impact factor: 13.078

Review 2.  Synthetic biology moving into the clinic.

Authors:  Warren C Ruder; Ting Lu; James J Collins
Journal:  Science       Date:  2011-09-02       Impact factor: 47.728

Review 3.  Engineering root microbiomes for healthier crops and soils using beneficial, environmentally safe bacteria.

Authors:  Pilar Martínez-Hidalgo; Maskit Maymon; Flora Pule-Meulenberg; Ann M Hirsch
Journal:  Can J Microbiol       Date:  2018-09-18       Impact factor: 2.419

Review 4.  Engineering bacteria for diagnostic and therapeutic applications.

Authors:  David T Riglar; Pamela A Silver
Journal:  Nat Rev Microbiol       Date:  2018-02-05       Impact factor: 60.633

Review 5.  Programming gene and engineered-cell therapies with synthetic biology.

Authors:  Tasuku Kitada; Breanna DiAndreth; Brian Teague; Ron Weiss
Journal:  Science       Date:  2018-02-09       Impact factor: 47.728

6.  Engineered bacteria can function in the mammalian gut long-term as live diagnostics of inflammation.

Authors:  David T Riglar; Tobias W Giessen; Michael Baym; S Jordan Kerns; Matthew J Niederhuber; Roderick T Bronson; Jonathan W Kotula; Georg K Gerber; Jeffrey C Way; Pamela A Silver
Journal:  Nat Biotechnol       Date:  2017-05-29       Impact factor: 54.908

Review 7.  Synthetic biology: applications come of age.

Authors:  Ahmad S Khalil; James J Collins
Journal:  Nat Rev Genet       Date:  2010-05       Impact factor: 53.242

Review 8.  Common principles and best practices for engineering microbiomes.

Authors:  Christopher E Lawson; William R Harcombe; Roland Hatzenpichler; Stephen R Lindemann; Frank E Löffler; Michelle A O'Malley; Héctor García Martín; Brian F Pfleger; Lutgarde Raskin; Ophelia S Venturelli; David G Weissbrodt; Daniel R Noguera; Katherine D McMahon
Journal:  Nat Rev Microbiol       Date:  2019-09-23       Impact factor: 60.633

9.  Engineering bacterial thiosulfate and tetrathionate sensors for detecting gut inflammation.

Authors:  Kristina N-M Daeffler; Jeffrey D Galley; Ravi U Sheth; Laura C Ortiz-Velez; Christopher O Bibb; Noah F Shroyer; Robert A Britton; Jeffrey J Tabor
Journal:  Mol Syst Biol       Date:  2017-04-03       Impact factor: 11.429

10.  Programmable assembly of pressure sensors using pattern-forming bacteria.

Authors:  Yangxiaolu Cao; Yaying Feng; Marc D Ryser; Kui Zhu; Gregory Herschlag; Changyong Cao; Katherine Marusak; Stefan Zauscher; Lingchong You
Journal:  Nat Biotechnol       Date:  2017-10-09       Impact factor: 54.908

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  12 in total

Review 1.  A rapid screening platform to coculture bacteria within tumor spheroids.

Authors:  Tetsuhiro Harimoto; Dhruba Deb; Tal Danino
Journal:  Nat Protoc       Date:  2022-07-29       Impact factor: 17.021

2.  Magnetically steerable bacterial microrobots moving in 3D biological matrices for stimuli-responsive cargo delivery.

Authors:  Mukrime Birgul Akolpoglu; Yunus Alapan; Nihal Olcay Dogan; Saadet Fatma Baltaci; Oncay Yasa; Gulsen Aybar Tural; Metin Sitti
Journal:  Sci Adv       Date:  2022-07-15       Impact factor: 14.957

Review 3.  Emerging strategies for engineering Escherichia coli Nissle 1917-based therapeutics.

Authors:  Jason P Lynch; Lisa Goers; Cammie F Lesser
Journal:  Trends Pharmacol Sci       Date:  2022-02-26       Impact factor: 17.638

4.  Development of a TNF-α-mediated Trojan Horse for bacteria-based cancer therapy.

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Journal:  Mol Ther       Date:  2022-04-18       Impact factor: 12.910

5.  Sense and sensibility: of synthetic biology and the redesign of bioreporter circuits.

Authors:  Shimshon Belkin; Baojun Wang
Journal:  Microb Biotechnol       Date:  2021-10-24       Impact factor: 5.813

Review 6.  The Future Potential of Biosensors to Investigate the Gut-Brain Axis.

Authors:  Jiefei Wang; W Seth Childers
Journal:  Front Bioeng Biotechnol       Date:  2022-01-14

7.  Engineered l-Lactate Responding Promoter System Operating in Glucose-Rich and Anoxic Environments.

Authors:  Ana Zúñiga; Miguel Camacho; Hung-Ju Chang; Elsa Fristot; Pauline Mayonove; El-Habib Hani; Jerome Bonnet
Journal:  ACS Synth Biol       Date:  2021-12-01       Impact factor: 5.110

Review 8.  Combating Infectious Diseases with Synthetic Biology.

Authors:  Anooshay Khan; Julian Ostaku; Ebru Aras; Urartu Ozgur Safak Seker
Journal:  ACS Synth Biol       Date:  2022-01-25       Impact factor: 5.110

Review 9.  Strategies for Improving Small-Molecule Biosensors in Bacteria.

Authors:  Corwin A Miller; Joanne M L Ho; Matthew R Bennett
Journal:  Biosensors (Basel)       Date:  2022-01-25

Review 10.  Achieving spatially precise diagnosis and therapy in the mammalian gut using synthetic microbial gene circuits.

Authors:  Clare M Robinson; Nina E Short; David T Riglar
Journal:  Front Bioeng Biotechnol       Date:  2022-09-02
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