Literature DB >> 34324671

Deep Ancestral Introgression Shapes Evolutionary History of Dragonflies and Damselflies.

Anton Suvorov1, Celine Scornavacca2, M Stanley Fujimoto3, Paul Bodily4, Mark Clement3, Keith A Crandall5, Michael F Whiting6,7, Daniel R Schrider1, Seth M Bybee6,7.   

Abstract

Introgression is an important biological process affecting at least 10% of the extant species in the animal kingdom. Introgression significantly impacts inference of phylogenetic species relationships where a strictly binary tree model cannot adequately explain reticulate net-like species relationships. Here, we use phylogenomic approaches to understand patterns of introgression along the evolutionary history of a unique, nonmodel insect system: dragonflies and damselflies (Odonata). We demonstrate that introgression is a pervasive evolutionary force across various taxonomic levels within Odonata. In particular, we show that the morphologically "intermediate" species of Anisozygoptera (one of the three primary suborders within Odonata besides Zygoptera and Anisoptera), which retain phenotypic characteristics of the other two suborders, experienced high levels of introgression likely coming from zygopteran genomes. Additionally, we find evidence for multiple cases of deep inter-superfamilial ancestral introgression. [Gene flow; Odonata; phylogenomics; reticulate evolution.].
© The Author(s) 2021. Published by Oxford University Press on behalf of the Society of Systematic Biologists.

Entities:  

Mesh:

Year:  2022        PMID: 34324671      PMCID: PMC9017697          DOI: 10.1093/sysbio/syab063

Source DB:  PubMed          Journal:  Syst Biol        ISSN: 1063-5157            Impact factor:   9.160


  130 in total

1.  A Monte Carlo approach successfully identifies randomness in multiple sequence alignments: a more objective means of data exclusion.

Authors:  Bernhard Misof; Katharina Misof
Journal:  Syst Biol       Date:  2009-05-20       Impact factor: 15.683

2.  Phylogeny-aware gap placement prevents errors in sequence alignment and evolutionary analysis.

Authors:  Ari Löytynoja; Nick Goldman
Journal:  Science       Date:  2008-06-20       Impact factor: 47.728

3.  Testing for ancient admixture between closely related populations.

Authors:  Eric Y Durand; Nick Patterson; David Reich; Montgomery Slatkin
Journal:  Mol Biol Evol       Date:  2011-02-15       Impact factor: 16.240

4.  PartitionFinder 2: New Methods for Selecting Partitioned Models of Evolution for Molecular and Morphological Phylogenetic Analyses.

Authors:  Robert Lanfear; Paul B Frandsen; April M Wright; Tereza Senfeld; Brett Calcott
Journal:  Mol Biol Evol       Date:  2017-03-01       Impact factor: 16.240

5.  The OGCleaner: filtering false-positive homology clusters.

Authors:  M Stanley Fujimoto; Anton Suvorov; Nicholas O Jensen; Mark J Clement; Quinn Snell; Seth M Bybee
Journal:  Bioinformatics       Date:  2016-09-10       Impact factor: 6.937

6.  Introgression and rapid species turnover in sympatric damselflies.

Authors:  Rosa A Sánchez-Guillén; Maren Wellenreuther; Adolfo Cordero-Rivera; Bengt Hansson
Journal:  BMC Evol Biol       Date:  2011-07-18       Impact factor: 3.260

7.  IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.

Authors:  Lam-Tung Nguyen; Heiko A Schmidt; Arndt von Haeseler; Bui Quang Minh
Journal:  Mol Biol Evol       Date:  2014-11-03       Impact factor: 16.240

8.  Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA.

Authors:  Emilia Huerta-Sánchez; Xin Jin; Zhuoma Bianba; Benjamin M Peter; Nicolas Vinckenbosch; Yu Liang; Xin Yi; Mingze He; Mehmet Somel; Peixiang Ni; Bo Wang; Xiaohua Ou; Jiangbai Luosang; Zha Xi Ping Cuo; Kui Li; Guoyi Gao; Ye Yin; Wei Wang; Xiuqing Zhang; Xun Xu; Huanming Yang; Yingrui Li; Jian Wang; Jun Wang; Rasmus Nielsen
Journal:  Nature       Date:  2014-07-02       Impact factor: 49.962

9.  CD-HIT: accelerated for clustering the next-generation sequencing data.

Authors:  Limin Fu; Beifang Niu; Zhengwei Zhu; Sitao Wu; Weizhong Li
Journal:  Bioinformatics       Date:  2012-10-11       Impact factor: 6.937

10.  Co-phylog: an assembly-free phylogenomic approach for closely related organisms.

Authors:  Huiguang Yi; Li Jin
Journal:  Nucleic Acids Res       Date:  2013-01-18       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.