Literature DB >> 34324338

The Next Frontier for Designing Switchable Proteins: Rational Enhancement of Kinetics.

Anthony T Bogetti1, Maria F Presti2, Stewart N Loh2, Lillian T Chong1.   

Abstract

Designing proteins that can switch between active (ON) and inactive (OFF) conformations in response to signals such as ligand binding and incident light has been a tantalizing endeavor in protein engineering for over a decade. While such designs have yielded novel biosensors, therapeutic agents, and smart biomaterials, the response times (times for switching ON and OFF) of many switches have been too slow to be of practical use. Among the defining properties of such switches, the kinetics of switching has been the most challenging to optimize. This is largely due to the difficulty of characterizing the structures of transient states, which are required for manipulating the height of the effective free energy barrier between the ON and OFF states. We share our perspective of the most promising new experimental and computational strategies over the past several years for tackling this next frontier for designing switchable proteins.

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Year:  2021        PMID: 34324338      PMCID: PMC8826494          DOI: 10.1021/acs.jpcb.1c04082

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  53 in total

Review 1.  The folding of an enzyme. I. Theory of protein engineering analysis of stability and pathway of protein folding.

Authors:  A R Fersht; A Matouschek; L Serrano
Journal:  J Mol Biol       Date:  1992-04-05       Impact factor: 5.469

Review 2.  Engineering Protein Switches for Rapid Diagnostic Tests.

Authors:  Hope Adamson; Lars J C Jeuken
Journal:  ACS Sens       Date:  2020-10-14       Impact factor: 7.711

Review 3.  Weighted Ensemble Simulation: Review of Methodology, Applications, and Software.

Authors:  Daniel M Zuckerman; Lillian T Chong
Journal:  Annu Rev Biophys       Date:  2017-03-01       Impact factor: 12.981

4.  Light-mediated activation reveals a key role for Rac in collective guidance of cell movement in vivo.

Authors:  Xiaobo Wang; Li He; Yi I Wu; Klaus M Hahn; Denise J Montell
Journal:  Nat Cell Biol       Date:  2010-05-16       Impact factor: 28.824

5.  A Ca2+-sensing molecular switch based on alternate frame protein folding.

Authors:  Margaret M Stratton; Diana M Mitrea; Stewart N Loh
Journal:  ACS Chem Biol       Date:  2008-11-21       Impact factor: 5.100

6.  Modeling of Hidden Structures Using Sparse Chemical Shift Data from NMR Relaxation Dispersion.

Authors:  R Bryn Fenwick; David Oyen; Henry van den Bedem; H Jane Dyson; Peter E Wright
Journal:  Biophys J       Date:  2020-12-08       Impact factor: 4.033

7.  De novo design of bioactive protein switches.

Authors:  Robert A Langan; Scott E Boyken; Andrew H Ng; Jennifer A Samson; Galen Dods; Alexandra M Westbrook; Taylor H Nguyen; Marc J Lajoie; Zibo Chen; Stephanie Berger; Vikram Khipple Mulligan; John E Dueber; Walter R P Novak; Hana El-Samad; David Baker
Journal:  Nature       Date:  2019-07-24       Impact factor: 49.962

8.  Fluorescence imaging-based high-throughput screening of fast- and slow-cycling LOV proteins.

Authors:  Fuun Kawano; Yuki Aono; Hideyuki Suzuki; Moritoshi Sato
Journal:  PLoS One       Date:  2013-12-18       Impact factor: 3.240

9.  Converting a binding protein into a biosensing conformational switch using protein fragment exchange.

Authors:  Huimei Zheng; Jing Bi; Mira Krendel; Stewart N Loh
Journal:  Biochemistry       Date:  2014-08-13       Impact factor: 3.162

10.  Real-Time Conformational Dynamics of SARS-CoV-2 Spikes on Virus Particles.

Authors:  Maolin Lu; Pradeep D Uchil; Wenwei Li; Desheng Zheng; Daniel S Terry; Jason Gorman; Wei Shi; Baoshan Zhang; Tongqing Zhou; Shilei Ding; Romain Gasser; Jérémie Prévost; Guillaume Beaudoin-Bussières; Sai Priya Anand; Annemarie Laumaea; Jonathan R Grover; Lihong Liu; David D Ho; John R Mascola; Andrés Finzi; Peter D Kwong; Scott C Blanchard; Walther Mothes
Journal:  Cell Host Microbe       Date:  2020-11-13       Impact factor: 21.023

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