Literature DB >> 34320411

Establishment, maintenance, and recall of inflammatory memory.

Samantha B Larsen1, Christopher J Cowley2, Sairaj M Sajjath2, Douglas Barrows3, Yihao Yang2, Thomas S Carroll3, Elaine Fuchs4.   

Abstract

Known for nearly a century but through mechanisms that remain elusive, cells retain a memory of inflammation that equips them to react quickly and broadly to diverse secondary stimuli. Using murine epidermal stem cells as a model, we elucidate how cells establish, maintain, and recall inflammatory memory. Specifically, we landscape and functionally interrogate temporal, dynamic changes to chromatin accessibility, histone modifications, and transcription factor binding that occur during inflammation, post-resolution, and in memory recall following injury. We unearth an essential, unifying role for the general stress-responsive transcription factor FOS, which partners with JUN and cooperates with stimulus-specific STAT3 to establish memory; JUN then remains with other homeostatic factors on memory domains, facilitating rapid FOS re-recruitment and gene re-activation upon diverse secondary challenges. Extending our findings, we offer a comprehensive, potentially universal mechanism behind inflammatory memory and less discriminate recall phenomena with profound implications for tissue fitness in health and disease.
Copyright © 2021 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  AP1 transcription factors; ATAC sequencing; CUT&RUN; ChIP sequencing; FOS; FOS:JUN; STAT3; broadened immune protection; epigenetic memory; histone modifications; inflammation; inflammatory disorders; inflammatory memory; tissue stem cells; trained immunity

Mesh:

Substances:

Year:  2021        PMID: 34320411      PMCID: PMC8500942          DOI: 10.1016/j.stem.2021.07.001

Source DB:  PubMed          Journal:  Cell Stem Cell        ISSN: 1875-9777            Impact factor:   25.269


  86 in total

1.  Gene-specific control of inflammation by TLR-induced chromatin modifications.

Authors:  Simmie L Foster; Diana C Hargreaves; Ruslan Medzhitov
Journal:  Nature       Date:  2007-05-30       Impact factor: 49.962

Review 2.  AP-1 in cell proliferation and survival.

Authors:  E Shaulian; M Karin
Journal:  Oncogene       Date:  2001-04-30       Impact factor: 9.867

3.  Interleukin-22, a T(H)17 cytokine, mediates IL-23-induced dermal inflammation and acanthosis.

Authors:  Yan Zheng; Dimitry M Danilenko; Patricia Valdez; Ian Kasman; Jeffrey Eastham-Anderson; Jianfeng Wu; Wenjun Ouyang
Journal:  Nature       Date:  2006-12-24       Impact factor: 49.962

4.  Master transcription factors and mediator establish super-enhancers at key cell identity genes.

Authors:  Warren A Whyte; David A Orlando; Denes Hnisz; Brian J Abraham; Charles Y Lin; Michael H Kagey; Peter B Rahl; Tong Ihn Lee; Richard A Young
Journal:  Cell       Date:  2013-04-11       Impact factor: 41.582

5.  Epigenetic control of innate and adaptive immune memory.

Authors:  Colleen M Lau; Nicholas M Adams; Clair D Geary; Orr-El Weizman; Moritz Rapp; Yuri Pritykin; Christina S Leslie; Joseph C Sun
Journal:  Nat Immunol       Date:  2018-08-06       Impact factor: 25.606

6.  Western Diet Triggers NLRP3-Dependent Innate Immune Reprogramming.

Authors:  Anette Christ; Patrick Günther; Mario A R Lauterbach; Peter Duewell; Debjani Biswas; Karin Pelka; Claus J Scholz; Marije Oosting; Kristian Haendler; Kevin Baßler; Kathrin Klee; Jonas Schulte-Schrepping; Thomas Ulas; Simone J C F M Moorlag; Vinod Kumar; Min Hi Park; Leo A B Joosten; Laszlo A Groh; Niels P Riksen; Terje Espevik; Andreas Schlitzer; Yang Li; Michael L Fitzgerald; Mihai G Netea; Joachim L Schultze; Eicke Latz
Journal:  Cell       Date:  2018-01-11       Impact factor: 41.582

Review 7.  Trained immunity: A program of innate immune memory in health and disease.

Authors:  Mihai G Netea; Leo A B Joosten; Eicke Latz; Kingston H G Mills; Gioacchino Natoli; Hendrik G Stunnenberg; Luke A J O'Neill; Ramnik J Xavier
Journal:  Science       Date:  2016-04-21       Impact factor: 47.728

8.  Allergic inflammatory memory in human respiratory epithelial progenitor cells.

Authors:  Jose Ordovas-Montanes; Daniel F Dwyer; Sarah K Nyquist; Kathleen M Buchheit; Marko Vukovic; Chaarushena Deb; Marc H Wadsworth; Travis K Hughes; Samuel W Kazer; Eri Yoshimoto; Katherine N Cahill; Neil Bhattacharyya; Howard R Katz; Bonnie Berger; Tanya M Laidlaw; Joshua A Boyce; Nora A Barrett; Alex K Shalek
Journal:  Nature       Date:  2018-08-22       Impact factor: 49.962

Review 9.  Activator protein 1 (Fos/Jun) functions in inflammatory bone and skin disease.

Authors:  Rainer Zenz; Robert Eferl; Clemens Scheinecker; Kurt Redlich; Josef Smolen; Helia B Schonthaler; Lukas Kenner; Erwin Tschachler; Erwin F Wagner
Journal:  Arthritis Res Ther       Date:  2008-01-18       Impact factor: 5.156

10.  deepTools2: a next generation web server for deep-sequencing data analysis.

Authors:  Fidel Ramírez; Devon P Ryan; Björn Grüning; Vivek Bhardwaj; Fabian Kilpert; Andreas S Richter; Steffen Heyne; Friederike Dündar; Thomas Manke
Journal:  Nucleic Acids Res       Date:  2016-04-13       Impact factor: 16.971

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  20 in total

Review 1.  One Size Does Not Fit All: Diversifying Immune Function in the Skin.

Authors:  Shruti Naik
Journal:  J Immunol       Date:  2022-01-15       Impact factor: 5.422

Review 2.  Epigenetic regulation of natural killer cell memory.

Authors:  Colleen M Lau; Gabriela M Wiedemann; Joseph C Sun
Journal:  Immunol Rev       Date:  2021-12-14       Impact factor: 12.988

3.  Stem cells expand potency and alter tissue fitness by accumulating diverse epigenetic memories.

Authors:  Kevin Andrew Uy Gonzales; Lisa Polak; Irina Matos; Matthew T Tierney; Anita Gola; Ellen Wong; Nicole R Infarinato; Maria Nikolova; Shijing Luo; Siqi Liu; Jesse S S Novak; Kenneth Lay; Hilda Amalia Pasolli; Elaine Fuchs
Journal:  Science       Date:  2021-11-26       Impact factor: 47.728

Review 4.  Inflammatory memory and tissue adaptation in sickness and in health.

Authors:  Shruti Naik; Elaine Fuchs
Journal:  Nature       Date:  2022-07-13       Impact factor: 69.504

5.  Cell and chromatin transitions in intestinal stem cell regeneration.

Authors:  Pratik N P Singh; Shariq Madha; Andrew B Leiter; Ramesh A Shivdasani
Journal:  Genes Dev       Date:  2022-06-23       Impact factor: 12.890

Review 6.  Biology of lung macrophages in health and disease.

Authors:  Helena Aegerter; Bart N Lambrecht; Claudia V Jakubzick
Journal:  Immunity       Date:  2022-09-13       Impact factor: 43.474

7.  Healing Ability of Central Corneal Epithelium in Rabbit Ocular Surface Injury Models.

Authors:  Wang Zhang; Xihong Lan; Jin Zhu; Canwei Zhang; Ying Huang; Kunlun Mo; Jieying Tan; Huizhen Guo; Huaxing Huang; Mingsen Li; Hong Ouyang; Li Wang
Journal:  Transl Vis Sci Technol       Date:  2022-06-01       Impact factor: 3.048

8.  Long-term culture-expanded alveolar macrophages restore their full epigenetic identity after transfer in vivo.

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Journal:  Nat Immunol       Date:  2022-02-24       Impact factor: 31.250

Review 9.  Epithelial-immune crosstalk in health and disease.

Authors:  Daniel Rosenblum; Shruti Naik
Journal:  Curr Opin Genet Dev       Date:  2022-04-20       Impact factor: 4.665

Review 10.  Innate Immune Memory and the Host Response to Infection.

Authors:  Edward R Sherwood; Katherine R Burelbach; Margaret A McBride; Cody L Stothers; Allison M Owen; Antonio Hernandez; Naeem K Patil; David L Williams; Julia K Bohannon
Journal:  J Immunol       Date:  2022-02-15       Impact factor: 5.422

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