| Literature DB >> 34319032 |
Sanjida Chowdhury Ivy1, Samia Shabnaz1, Mohammad Shahriar1, Sarah Jafrin1, Tutun Das Aka2, Md Abdul Aziz2, Mohammad Safiqul Islam2.
Abstract
OBJECTIVE: Alterations in common DNA repair genes (RAD51 and XRCC2) may lead to cervical cancer (CC) development. In the present study, we analyzed the association between RAD51 rs1801320 and XRCC2 rs3218536 polymorphisms and CC.Entities:
Keywords: Bangladesh; Cervical cancer; Polymorphism; RAD51; XRCC2
Mesh:
Substances:
Year: 2021 PMID: 34319032 PMCID: PMC8607109 DOI: 10.31557/APJCP.2021.22.7.2099
Source DB: PubMed Journal: Asian Pac J Cancer Prev ISSN: 1513-7368
Primers, PCR Conditions and Restriction Enzymes with Digestion Condition of the Selected Alleles of RAD51 and XRCC2 genes
| SNPs | Primers | GC (%) | PCR condition | No. of cycles | SAF (bp) | RE | Digestion condition | Expected fragment |
|---|---|---|---|---|---|---|---|---|
|
| FP: 5’-TGGGAACTGCAACTCATCTGG-3’ | 52.4 | 95°C 30s | 35 | 157 | BstNI | 60°C (incubated for 4 hours) | NH:GG: 71,86 |
| 66.8°C 30s | HE:GC :71,86,157 | |||||||
| RP: 5’-GCGCTCCTCTCTCCAGCAG-3’ | 68.4 | 72°C 60s | MH:CC: 157 | |||||
|
| FP: 5'- TTGCTGCCATGCCTTACAGA -3' | 50 | 95°C 30s | 35 | 234 | Hph1 | 37ºC (incubated overnight) | NH:GG: 234 |
| 51.9°C 30s | HE:GA: 87,147,234 | |||||||
| RP: 5'- TGGATAGACCGCGTCAATGG -3' | 55 | 72°C 60s | MH: AA: 87,147 |
SNPs, single nucleotide polymorphisms; GC, guanine-cytosine; FP, Forward primer; RP, Reverse primer; SAF, size of amplification fragment; BP, base pair; RE, restriction endonuclease; NH, normal homozygote; H, heterozygote; MH, mutant homozygote
Figure 1PCR-RFLP of RAD51 rs1801320 in 2% Agarose Gel; Lane-1 contains 50 bp ladder; lane 2 indicates GG genotype; lane 3, 8 indicate GC genotype; lane 4-7 indicate CC genotype
Figure 2PCR-RFLP of XRCC2 rs3218536 in 2% Agarose Gel; Lane-1 contains 50 bp ladder; lanes 2-5, 8 indicate AA genotype; lane 6 indicates GA genotype; lane 7 indicates GG genotype
Clinical Characteristics of Cervical Cancer Cases and Controls
| Variables | Cases, n (%) | Controls, n (%) |
|---|---|---|
| Number | 225 | 199 |
| Age (Years) | ||
| Mean age | 57.64 | 52.54 |
| <45 | 16 (7.11) | 15 (7.4) |
| 45-60 | 147 (65.33) | 101 (50.75) |
| >60 | 62 (27.56) | 83 (41.71) |
| BMI (kg/m2) (±SD) | ||
| Overweight | N/A | |
| 19 (8.44) | ||
| 26.53 ± 0.85 | ||
| Normal | N/A | |
| 206 (91.56) | ||
| 19.02 ± 2.89 | ||
| Smoking status | No | No |
| Contraception | ||
| Oral pills | 124 (55.11) | 90 (45.23) |
| Others | 20 (8.89) | 40 (20.10) |
| None | 81 (36) | 69 (34.67) |
BMI, body mass index; NA, not available
Association of Several Genotypes and Alleles of rs1801320 and rs3218536 with Cervical Cancer
| Polymorphisms | Genotype/Allele | Cases (n=225) (%) | Controls (n=199) (%) | OR (95% CI) | p-value | aOR (95% CI) | p-value |
|---|---|---|---|---|---|---|---|
|
| GG | 120 (53.33) | 147 (73.87) | 1 | - | 1 | - |
| GC vs. GG | 83 (36.89) | 46 (23.12) | 2.21 (1.43-3.41) |
| 2.21 (1.43-3.42) |
| |
| CC vs. GG | 22 (9.78) | 6 (3.02) | 4.49 (1.76- 11.43) |
| 4.48 (1.76-11.42) |
| |
| Dominant model | 105 (46.67) | 52 (26.13) | 2.47 (1.64-3.73) |
| 2.49 (1.65-3.76) |
| |
| Recessive model | 22 (9.78) | 6 (3.01) | 3.49 (1.38 - 8.78) |
| 3.52 (1.40-8.88) |
| |
| C allele | 127 (28.22) | 58 (14.57) | 2.30 (1.63-3.26) |
| - |
| |
|
| GG | 77 (34.22) | 120 (60.30) | 1 |
| 1 |
|
| GA vs. GG | 129 (57.33) | 74 (37.19) | 2.72 (1.81-4.07) |
| 2.77 (1.85-4.17) |
| |
| AA vs. GG | 19 (8.44) | 5 (2.51) | 5.92 (2.12-16.52) |
| 5.86 (2.08-16.50) |
| |
| Dominant model | 148 (65.78) | 79 (39.70) | 2.91 (1.97-4.34) |
| 2.97 (1.99-4.42) |
| |
| Recessive model | 19 (8.44) | 5 (2.51) | 3.58 (1.31-9.77) |
| 3.56 (1.30-9.73) |
| |
| A allele | 167 (37.11) | 84 (21.11) | 2.21 (1.62-3.00) |
| - |
|
OR, Odds ratio: aOR, Adjusted odds ratio; 95% Cl, 95% confidence interval; p <0.05 is significant (bold)
Correlation of rs1801320 and rs3218536 Polymorphisms with Overweight Cervical Cancer Cases
| Polymorphisms | Risk allele | RAF | Genotype | Cases with overweight (n=19) (%) | Cases with normal weight (n=206) (%) | OR (95% CI) | p-value |
|---|---|---|---|---|---|---|---|
|
| C | 0.37 | GG | 7 (36.84) | 113 (54.85) | 1 | - |
| GC | 10 (52.63) | 73 (35.44) | 2.21 (0.81-6.07) | 0.12 | |||
| CC | 2 (10.53) | 20 (9.71) | 1.61 (0.31- 8.34) | 0.57 | |||
| GC+CC | 12 (63.16) | 93 (45.15) | 2.08 (0.79-5.50) | 0.14 | |||
|
| A | 0.42 | GG | 6 (31.58) | 71 (34.47) | 1 | - |
| GA | 10 (52.63) | 119 (57.76) | 0.99 (0.35-2.89) | 0.99 | |||
| AA | 3 (15.79) | 16 (7.77) | 2.22 (0.50-9.83) | 0.29 | |||
| GA+AA | 13 (68.42) | 135 (65.53) | 1.14 (0.42-3.13) | 0.8 |
RAF, risk allele frequencies; OR, odds ratio; 95% Cl, 95% confidence interval; p <0.05 is significant
Correlation of rs1801320 and rs3218536 Polymorphisms with Older Cervical Cancer Cases
| Characteristics | Cases |
|
| ||||||
|---|---|---|---|---|---|---|---|---|---|
| HE+MH | NH | OR (95 % CI) | p-value | HE+MH | NH | OR (95 % CI) | p-value | ||
| Age (Years) | |||||||||
| <45 | 16 | 6 | 10 | 0.67 (0.23-1.90) | 0.45 | 11 | 5 | 1.16 (0.39-3.46) | 0.8 |
| 45-60 | 147 | 79 | 68 | 1.29 (0.85-1.97) | 0.24 | 86 | 61 | 0.74 (0.48-1.14) | 0.18 |
| >60 | 62 | 20 | 42 | 0.53 (0.29-0.96) | 0.04 | 51 | 11 | 2.44 (1.20-4.96) | 0.01 |
| 45-60 + >60 | 209 | 99 | 110 | Ref. | - | 137 | 72 | Ref. | - |
HE, heterozygous; MH, mutant homozygous; NH, normal homozygous; OR, odds ratio; 95% Cl, 95% confidence interval; p <0.05 is significant; Bold values are identified as statistically significant.