Literature DB >> 34314646

Something old, something new, a DNA preparation procedure for long-read genomic sequencing.

Hongjun Wang1,1, Sen Xu1,1.   

Abstract

Extracting high-molecular-weight DNA is critical for successful long-read DNA sequencing. Here, we present a DNA preparation procedure combining the CTAB DNA extraction protocol and a short-read eliminator kit, which consistently produces high yields of high-molecular-weight DNA in the freshwater microcrustacean Daphnia. This method only requires common chemicals and equipment, providing researchers a viable alternative to DNA extraction kits that often require specialized tools.

Entities:  

Keywords:  CTAB; Daphnia ; long-read sequencing; séquençage de troisième génération; séquençage à lecture longue; third-generation sequencing

Year:  2021        PMID: 34314646      PMCID: PMC8904135          DOI: 10.1139/gen-2021-0029

Source DB:  PubMed          Journal:  Genome        ISSN: 0831-2796            Impact factor:   2.166


  6 in total

1.  Comparison of DNA extraction methods for non-marine molluscs: is modified CTAB DNA extraction method more efficient than DNA extraction kits?

Authors:  Sudeshna Chakraborty; Anwesha Saha; Aravind Neelavar Ananthram
Journal:  3 Biotech       Date:  2020-01-25       Impact factor: 2.406

2.  Extraction of DNA suitable for PCR applications from mature leaves of Mangifera indica L.

Authors:  Muhammad Abubakkar Azmat; Iqrar Ahmad Khan; Hafiza Masooma Naseer Cheema; Ishtiaq Ahmad Rajwana; Ahmad Sattar Khan; Asif Ali Khan
Journal:  J Zhejiang Univ Sci B       Date:  2012-04       Impact factor: 3.066

3.  Efficient isolation of high quality nucleic acids from different tissues of Taxus baccata L.

Authors:  Abolghasem Abbasi Kejani; Sayed Ali Hosseini Tafreshi; Sayed Mojtaba Khayyam Nekouei; Mohammad Reza Mofid
Journal:  Mol Biol Rep       Date:  2009-07-04       Impact factor: 2.316

4.  Precipitation of DNA with Isopropanol.

Authors:  Michael R Green; Joseph Sambrook
Journal:  Cold Spring Harb Protoc       Date:  2017-08-01

5.  Optimisation of DNA extraction from the crustacean Daphnia.

Authors:  Camila Gonçalves Athanasio; James K Chipman; Mark R Viant; Leda Mirbahai
Journal:  PeerJ       Date:  2016-05-10       Impact factor: 2.984

6.  Comprehensive analysis of structural variants in breast cancer genomes using single-molecule sequencing.

Authors:  Sergey Aganezov; Sara Goodwin; Rachel M Sherman; Fritz J Sedlazeck; Gayatri Arun; Sonam Bhatia; Isac Lee; Melanie Kirsche; Robert Wappel; Melissa Kramer; Karen Kostroff; David L Spector; Winston Timp; W Richard McCombie; Michael C Schatz
Journal:  Genome Res       Date:  2020-09-04       Impact factor: 9.438

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.