| Literature DB >> 34312841 |
Miguel Alcoceba1, María García-Álvarez1, M Carmen Chillón1, Cristina Jiménez1, Alejandro Medina1, Alicia Antón1, Oscar Blanco2, Luis G Díaz3, Pilar Tamayo3, Verónica González-Calle1, María Jesús Vidal4, Rebeca Cuello5, Francisco Javier Díaz Gálvez5, José Antonio Queizán6, Alejandro Martín1, Marcos González1, Ramón García-Sanz1, M Eugenia Sarasquete1.
Abstract
The Hodgkin lymphoma (HL) genomic landscape is hardly known due to the scarcity of tumour cells in the tissue. Liquid biopsy employing circulating tumour DNA (ctDNA) can emerge as an alternative tool for non-invasive genotyping. By using a custom next generation sequencing (NGS) panel in combination with unique molecule identifiers, we aimed to identify somatic variants in the ctDNA of 60 HL at diagnosis. A total of 277 variants were detected in 36 of the 49 samples (73·5%) with a good quality ctDNA sample. The median number of variants detected per patient was five (range 1-23) with a median variant allele frequency of 4·2% (0·84-28%). Genotyping revealed somatic variants in the following genes: SOCS1 (28%), IGLL5 (26%), TNFAIP3 (23%), GNA13 (23%), STAT6 (21%) and B2M (19%). Moreover, several poor prognosis features (high LDH, low serum albumin, B-symptoms, IPI ≥ 3 or at an advanced stage) were related to significantly higher amounts of ctDNA. Variant detection in ctDNA by NGS is a feasible approach to depict the genetic features of HL patients at diagnosis. Our data favour the implementation of liquid biopsy genotyping for the routine evaluation of HL patients.Entities:
Keywords: Hodgkin lymphoma; circulating tumour DNA; liquid biopsy; next generation sequencing
Mesh:
Substances:
Year: 2021 PMID: 34312841 DOI: 10.1111/bjh.17719
Source DB: PubMed Journal: Br J Haematol ISSN: 0007-1048 Impact factor: 6.998