Literature DB >> 34310608

Bridging cell-scale simulations and radiologic images to explain short-time intratumoral oxygen fluctuations.

Jessica L Kingsley1,2, James R Costello3, Natarajan Raghunand4,5, Katarzyna A Rejniak1,5.   

Abstract

Radiologic images provide a way to monitor tumor development and its response to therapies in a longitudinal and minimally invasive fashion. However, they operate on a macroscopic scale (average value per voxel) and are not able to capture microscopic scale (cell-level) phenomena. Nevertheless, to examine the causes of frequent fast fluctuations in tissue oxygenation, models simulating individual cells' behavior are needed. Here, we provide a link between the average data values recorded for radiologic images and the cellular and vascular architecture of the corresponding tissues. Using hybrid agent-based modeling, we generate a set of tissue morphologies capable of reproducing oxygenation levels observed in radiologic images. We then use these in silico tissues to investigate whether oxygen fluctuations can be explained by changes in vascular oxygen supply or by modulations in cellular oxygen absorption. Our studies show that intravascular changes in oxygen supply reproduce the observed fluctuations in tissue oxygenation in all considered regions of interest. However, larger-magnitude fluctuations cannot be recreated by modifications in cellular absorption of oxygen in a biologically feasible manner. Additionally, we develop a procedure to identify plausible tissue morphologies for a given temporal series of average data from radiology images. In future applications, this approach can be used to generate a set of tissues comparable with radiology images and to simulate tumor responses to various anti-cancer treatments at the tissue-scale level.

Entities:  

Year:  2021        PMID: 34310608     DOI: 10.1371/journal.pcbi.1009206

Source DB:  PubMed          Journal:  PLoS Comput Biol        ISSN: 1553-734X            Impact factor:   4.475


  49 in total

1.  Transmembrane cooperative linkage in cellular adhesion.

Authors:  Werner Baumgartner; Detlev Drenckhahn
Journal:  Eur J Cell Biol       Date:  2002-03       Impact factor: 4.492

2.  Low-field magnetic resonance imaging to visualize chronic and cycling hypoxia in tumor-bearing mice.

Authors:  Hironobu Yasui; Shingo Matsumoto; Nallathamby Devasahayam; Jeeva P Munasinghe; Rajani Choudhuri; Keita Saito; Sankaran Subramanian; James B Mitchell; Murali C Krishna
Journal:  Cancer Res       Date:  2010-07-20       Impact factor: 12.701

Review 3.  Mechanism-Based Modeling of Tumor Growth and Treatment Response Constrained by Multiparametric Imaging Data.

Authors:  David A Hormuth; Angela M Jarrett; Ernesto A B F Lima; Matthew T McKenna; David T Fuentes; Thomas E Yankeelov
Journal:  JCO Clin Cancer Inform       Date:  2019-02

4.  Variations in tumor cell growth rates and metabolism with oxygen concentration, glucose concentration, and extracellular pH.

Authors:  J J Casciari; S V Sotirchos; R M Sutherland
Journal:  J Cell Physiol       Date:  1992-05       Impact factor: 6.384

Review 5.  Towards personalized computational oncology: from spatial models of tumour spheroids, to organoids, to tissues.

Authors:  Aleksandra Karolak; Dmitry A Markov; Lisa J McCawley; Katarzyna A Rejniak
Journal:  J R Soc Interface       Date:  2018-01       Impact factor: 4.118

Review 6.  Determinants of tumor blood flow: a review.

Authors:  R K Jain
Journal:  Cancer Res       Date:  1988-05-15       Impact factor: 12.701

7.  Size-Based Differentiation of Cancer and Normal Cells by a Particle Size Analyzer Assisted by a Cell-Recognition PC Software.

Authors:  Babita Shashni; Shinya Ariyasu; Reisa Takeda; Toshihiro Suzuki; Shota Shiina; Kazunori Akimoto; Takuto Maeda; Naoyuki Aikawa; Ryo Abe; Tomohiro Osaki; Norihiko Itoh; Shin Aoki
Journal:  Biol Pharm Bull       Date:  2018-01-13       Impact factor: 2.233

8.  Imaging tumor microscopic viscosity in vivo using molecular rotors.

Authors:  Lyubov' E Shimolina; Maria Angeles Izquierdo; Ismael López-Duarte; James A Bull; Marina V Shirmanova; Larisa G Klapshina; Elena V Zagaynova; Marina K Kuimova
Journal:  Sci Rep       Date:  2017-01-30       Impact factor: 4.379

9.  Morphophenotypic classification of tumor organoids as an indicator of drug exposure and penetration potential.

Authors:  Aleksandra Karolak; Sharan Poonja; Katarzyna A Rejniak
Journal:  PLoS Comput Biol       Date:  2019-07-16       Impact factor: 4.475

10.  Evaluating patient-specific neoadjuvant regimens for breast cancer via a mathematical model constrained by quantitative magnetic resonance imaging data.

Authors:  Angela M Jarrett; David A Hormuth; Chengyue Wu; Anum S Kazerouni; David A Ekrut; John Virostko; Anna G Sorace; Julie C DiCarlo; Jeanne Kowalski; Debra Patt; Boone Goodgame; Sarah Avery; Thomas E Yankeelov
Journal:  Neoplasia       Date:  2020-11-14       Impact factor: 5.715

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