Yurii A Sayapin1, Igor V Dorogan2, Evgeny A Gusakov2, Duong Nghia Bang3,4, Valery V Tkachev5, Inna Olegovna Tupaeva2, Dai Lam Tran6, Trang Van Nguyen6, Toan Ngoc Duong7, Hoang Vu Dinh6, Tatyana A Krasnikova2, Serguei M Aldoshin5, Vladimir I Minkin1,2. 1. Southern Scientific Center of Russian Academy of Science, 141, Chekhova Str., Rostov on Don 344006, Russia. 2. Southern Federal University, Institute of Physical and Organic Chemistry, 194/2, Stachka Av., Rostov na Donu 344090, Russia. 3. Thai Nguyen University of Sciences, Tan Thinh Ward, Thai Nguyen 24000, Vietnam. 4. Thai Nguyen Institute of Science and Technology, Tan Thinh Ward, Thai Nguyen 24000, Vietnam. 5. Institute of Problems of Chemical Physics, 1 Academician Semenov Avenue, Moscow 142432, Russia. 6. Institute for Tropical Technology, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Ha Noi 100000, Vietnam. 7. Thai Nguyen University of Education, 20 Luong Ngoc Quyen, Thai Nguyen 24000, Vietnam.
Abstract
Derivatives of 2-(2-indolyl)-cyclopenta[b]pyrrole-3,4-diones and pyrindino[1,2-a]indoles were synthesized by a new reaction of contraction of the o-quinone ring, and their structures were investigated by X-ray crystallography and nuclear magnetic resonance spectroscopy. The mechanisms of the reactions were suggested based on density functional theory calculations of the critical parts of the potential energy surfaces.
Derivatives of 2-(2-indolyl)-cyclopenta[b]pyrrole-3,4-diones and pyrindino[1,2-a]indoles were synthesized by a new reaction of contraction of the o-quinone ring, and their structures were investigated by X-ray crystallography and nuclear magnetic resonance spectroscopy. The mechanisms of the reactions were suggested based on density functional theory calculations of the critical parts of the potential energy surfaces.
Due
to their diverse biological (antibacterial, antimicrobial,
anticancer, antidiabetic, and others) activities, derivatives of indole
including those with fused aromatic and alicyclic rings attract considerable
interest.[1−9] The compounds obtained in this work contain skeletal fragments of
pyrido[1,2]indoles, HIV-1 inhibitors,
and the alkaloid cantinone, known for its antibacterial and antimalarial
properties.[10−12] The thoroughly studied approaches to the synthesis
of polycyclic indole systems are based on catalytic intramolecular
cyclization reactions of 2-(2-bromobenzyl) indoles, N-bromobenzylindoles (cat. Cu(I and II)), N-alkylindoles
(cat. Co(II)), and indolyl-1,6-enins (indolyl-1,6-enynes) (cat. Au(I)).[13−15] An efficient method for the synthesis of polycyclic indoles is presented
by the acid-catalyzed reactions of o-(tosylamino)benzyl
alcohols with furans (cat. TfOH).[16] Cascade
reactions of bromophenyl and iodobenzyl indolines with alkynes in
the presence of Pd(II) salts afford indolines with condensed six-
or seven-membered rings.[17]In recent
times, some scientists have demonstrated that the product
structure made up from the reactions of 4,5,6,7-tetrachloro-1,2-benzoquinone
(o-chloranil) and 3,5-di(tert-butyl)-1,2-benzoquinone
depends on the substituents on the 1,2-benzoquinone ring.[18] The results of the reaction of 2,3,3-trimethylindoline 1a with o-chloranil 2 perform
the process of opening 1,2-benzoquinone to create the product 2-(2-indolyl)-1,3-tropolones 3, while the reaction of 1a with 3,5-di(tert-butyl)-1,2-benzoquinone 4 forms derivatives
of indolo[1,2-a]indolines 5 (Scheme ).[19]
Scheme 1
General
Scheme of the Synthesis of Indolo[1,2-a]indolines
In this paper, we report the synthesis of two new polycyclic
indole
systems 7 and 8 obtained in the course of
the o-quinone ring contraction reaction by refluxing
of 2,3,3-trimethylindoline derivatives 1 with 4,6-di(tert-butyl)-3-nitro-1,2-benzoquinone 6 in glacial
acetic acid for 10 h. 2-tert-Butoxy-4,6-di(tert-butyl)-3-nitrophenol 9 was also isolated
as a by/side product of this reaction (Scheme ). Specific details of the reaction procedures
are given in the Supporting Information.
Scheme 2
General Scheme of the Synthesis of New Polycyclic Indoles
Results and Discussion
Experimental Results
Total yields (40–50%) of
final products 7 and 8 were achieved with
a double excess of quinone 6. The relatively low yields
of the desired products are caused by resinification of the reaction
mixture and the formation of difficult-to-isolate byproducts with
unidentified structures. Lower yields (16%) of polycyclic indole systems 8c are probably due to the steric effect of the condensed
benzene ring being in the same plane as the pyridine fragment.The structure of compounds 7–9 obtained
by us was confirmed by 1H and 13C NMR data,
IR spectroscopy, and mass spectrometry. In the 1H NMR spectra
of compounds 7, the signal of the bridging proton of
the bicyclic product is observed in the range of δH 3.74–3.78
ppm in the form of a narrow singlet peak. The 1H NMR spectrum
of polycyclic indoles 8 is characterized by the presence
of signals from the protons of the pyridine ring at δH 6.6 and
7.4 ppm in the form of narrow singlet peaks. The IR spectra of products 7 and 8 are characterized by the presence of
absorption bands of vibrations of carbonyl groups in the regions of
1730 and 1690 cm–1 for 7 and 1700 and
1645 cm–1 for 8.In contrast
to the known approaches to the synthesis of polycyclic
indoles, the new reaction of narrowing the o-quinone
ring is not optimized. Despite the relatively low yield of target
products 7 and 8 caused by the severe conditions
of the synthesis, the advantage of the proposed process is the availability
and low cost of the initial reagents.Molecular structures of
5,6a-di(tert-butyl)-2-(3,3-dimethylindol-2-yl)-1-N-oxy-3a,6a-dihydro-cyclopenta[b]pyrrole-3,4-dione7a, 13,13-dimethyl-9-tert-butyl-13H-pyrindino[1,2-a]benzo[e]indole-10,11-dione8b, and 2-tert-butoxy-4,6-di(tert-butyl)-3-nitrophenol 9 have been determined by X-ray
structural analysis (Figures –3).
Figure 1
Molecular structure
of 5,6a-di(tert-butyl)-2-(3,3-dimethylindol-2-yl)-1-N-oxy-3a,6a-dihydro-cyclopenta[b]pyrrole-3,4-dione 7a. Thermal ellipsoids are drawn on the 50% probability level.
Figure 3
Molecular structure of 2-tert-butoxy-4,6-di(tert-butyl)-3-nitrophenol 9. Thermal ellipsoids
are drawn on the 50% probability level.
Molecular structure
of 5,6a-di(tert-butyl)-2-(3,3-dimethylindol-2-yl)-1-N-oxy-3a,6a-dihydro-cyclopenta[b]pyrrole-3,4-dione7a. Thermal ellipsoids are drawn on the 50% probability level.Molecular structure of 13,13-dimethyl-9-tert-butyl-13H-pyrindino[1,2-a]benzo[e]indole-10,11-dione8b. Thermal ellipsoids are drawn on the 50% probability level.Molecular structure of 2-tert-butoxy-4,6-di(tert-butyl)-3-nitrophenol 9. Thermal ellipsoids
are drawn on the 50% probability level.The main structural parameters of these compounds are given in
the Supporting Information.
Theoretical
Calculations
The reaction mechanism for
the formation of 5,6a-di(tert-butyl)-2-(3,3-dimethylindol-2-yl)-1-N-oxy-3a,6a-dihydro-cyclopenta[b]pyrrole-3,4-dione7a, pyrindino[1,2-a]indole8a, and 2-tert-butoxy-4,6-di(tert-butyl)-3-nitrophenol 9 has been elucidated by means of calculations using the density
functional theory (DFT) method with the PBE0 functional. The 6-311G(d,p)
basis set was used to optimize geometries, and their single point
energies were calculated at the PBE0/6-311++G(d,p) level. Results
of the calculations are given in Figures –7, principal
reaction stages are portrayed in Schemes –7, and the
optimized structures of all transition states are shown in Figure S1 (SI).
Figure 4
PES of the reactions of Scheme .
Figure 7
EPR spectrum
of the solution of 2,3,3-trimethylindoline 1a (0.03 mL,
0.2 mmol) and 4,6-di(tert-butyl)-3-nitro-1,2-benzoquinone 6 (0.106 g, 0.4 mmol) in glacial acetic acid (0.5 mL) recorded
after boiling of the reaction mixture in a sealed ampoule for 1 h.
Scheme 7
The Mechanism for the Formation of
Products 8 and 9 Part 2
PES of the reactions of Scheme .
Scheme 3
The Mechanism for the Formation of Product 7 Part 1
PES of
the reactions of Scheme .
Scheme 4
The Mechanism for the Formation of
Product 7 Part 2
PES of the reactions of Scheme .
Scheme 5
The Mechanism for the Formation of Products 8 and 9 Part 1
EPR spectrum
of the solution of 2,3,3-trimethylindoline 1a (0.03 mL,
0.2 mmol) and 4,6-di(tert-butyl)-3-nitro-1,2-benzoquinone 6 (0.106 g, 0.4 mmol) in glacial acetic acid (0.5 mL) recorded
after boiling of the reaction mixture in a sealed ampoule for 1 h.The presence of 2-tert-butoxy-4,6-di(tert-butyl)-3-nitrophenol 9 as a byproduct
may be evidence
of participation of 4,6-di(tert-butyl)-3-nitro-1,2-benzoquinone 6 in the oxidative dealkylation of the intermediate products
in the course of the formation of pyrindino[1,2-a]indoles8a–c. The 2-tert-butyl-cyclopenta-2-enone
fragment can be formed by the contraction of the o-quinone cycle of quinone 6. A similar type of structural
transformation of the o-quinone cycle occurs during
photodecarbonylation of 1,2-benzoquinones and is also a result of
the interaction of 3,5-di(tert-butyl)-1,2-benzoquinone
or 3,4,5,6-tetrachloro-1,2-benzoquinone with hydrogen peroxide in
the presence of catalytic amounts of iodine giving rise to 2,4-di(tert-butyl)-cyclopentadienone and 2,3,4,5-tetrachloro-cyclopenta-dienone,
respectively.[20,21]The intermediate 10 (Scheme ), formed
as a result of aldol condensation
of 1 with 6, was taken as a starting structure
for the subsequent series of transformations leading to 7 and 8.[22]The first
stage of the reaction, i.e., contraction of the o-quinone cycle with an activation barrier of 37.0 kcal/mol,
leads to cyclopentadiene derivative 11. This process
is accompanied by the proton transfer from the hydroxyl group to the
carbonyl oxygen. The heterocyclic fragment of 11 at the
subsequent reaction step almost freely (the energy barrier is 10.2
kcal/mol) rotates around the C–C bond, in such a way that its
carbonyl group becomes located above the five-membered ring (structure 11′). The subsequent [1,2]-sigmatropic shift of the
heterocyclic group (with an activation barrier of 19.5 kcal/mol) leads
to the formation of the intermediate 12. At this point,
the reaction path is divided into the two channels leading to products 7 and 8.The reason for this branching
is a possibility of the sigmatropic
shifts of a nitro group into two adjacent positions of the five-membered
ring to form two isoenergy intermediates.The reaction path
starting with a displacement of the nitro group
of intermediate 12′ to the fifth position with
a tert-butyl substituent (part A) leads to product 7. The competitive shift to the second position with a hydroxyl
group (part B) ultimately leads to the formation of 8 and 9. Thus, the formation of product 7 from the bifurcation point of the reaction paths begins with a [1,5]-sigmatropic
shift of the nitro group. The calculated activation barrier of this
process was found to be 20.9 kcal/mol. The resulting intermediate 13 transforms to a more stable structure 13′. The further course of the reaction includes the formation of a
bicyclic structure 14 initiated by a proton transfer
from the CH group of the intermediate 13′ to the
nitro group with an activation barrier of ∼60 kcal/mol, which
cannot be overcome in the course of the thermally initiated reaction.Therefore, we have considered alternative variants of the reaction
mechanism and found out that the most energy-favorable way to the
formation of the bicyclic framework of the final product is given
by the concerted double proton transfer from a nitrogen atom of the
indoline fragment of 13′-ac to an oxygen atom
of the nitro group with acetic acid molecules as a mediator of the
reaction (Scheme and Figure ). The activation
barrier of this process was found to be 40.1 kcal/mol. The structure
of the final reaction product 7 suggests that the intermediate 14-ac should be subjected to dehydration with the subsequent
proton transfer to the carbon atom of the bridge of the bicyclic fragment.
The OH group at the nitrogen atom in 14-ac is protonated
by an acid to eliminate a molecule of water, the carboxylate anion
removes a proton from the hydroxyl group of the bicyclic fragment,
and the energy of the system (complex 15-ac) is lowered
by 10.9 kcal/mol.
Figure 5
PES of
the reactions of Scheme .
The final stage of the formation of 7a is a low-energy
barrier (6.2 kcal/mol) acid-assisted proton transfer from the CH group
to the bridge fragment of the bicycle.As mentioned above, the
reaction path to product 8 starts from a [1,2]-sigmatropic
shift of the nitro group of the
intermediate 12′. The calculated activation barrier
of this reaction stage is equal to 11.2 kcal/mol and the resulting
product 16 is thermodynamically more stable than the
initial structure by 8.7 kcal/mol (Scheme and Figure ). The subsequent stages of the reaction include rotation
of the heteroaryl fragment with a barrier of 3.4 kcal/mol and proton
transfer from the hydroxyl group to an oxygen of the nitro group with
a barrier of 13.3 kcal/mol that finally leads to elimination of a
molecule of nitrous acid (structure 17-ac).
Figure 6
PES of the reactions of Scheme .
The
structures of products 8 and 9 clearly
indicate that in the process of their formation, intermediate product 17 should undergo cyclization along with the elimination of
a tert-Bu group and deprotonation of the nitrogen
atom.On the one hand, it has been reported that oxidative dealkylation
of 2,4,6-tri-tert-butylphenol catalyzed by mononuclear
copper(II) complexes occurred with the formation of radical species.[23]On the other hand,
quinones are well-known to act as a one-electron
oxidant in single-electron transfer (SET) reactions with the formation
of semiquinone radicals.[24]To qualitatively
confirm the formation of radicals in the course
of the reaction under study, an EPR spectroscopy method was employed.
The resulting spectrum of the reaction mixture of 1a and 6 consists of a broad unresolved singlet with g = 2.0, which undoubtedly indicates the presence of radical centers
(Figure ).Hence,
it is reasonable to suggest that the formation of products 8 and 9 proceeded by one-electron oxidation of
the intermediate 17 by quinone 6 followed
by further deprotonation of the nitrogen atom of 17 giving
rise to radicals 18 and 19 (Scheme ).
Scheme 6
One-Electron Oxidation
Progress of the Intermediate 17 by Quinone 6
The radical 18 readily (with a barrier of 1.8 kcal/mol)
isomerizes into the thermodynamically more stable structure 20, which then cyclizes to form the intermediate 21 (Scheme and Figure ). The activation
barrier for this reaction stage was found to be 20.8 kcal/mol. A further
reaction pathway involves the elimination of a tert-butyl radical from 21 with an activation barrier of
14.4 kcal/mol to give the final product 8. Another reaction
product 9 is formed as a result of combining a tert-butyl radical with radical 19.
Figure 8
PES of the
reactions of Scheme .
PES of the
reactions of Scheme .
Conclusions
To
sum up, we have reported a new facile approach to synthesize
two novel types of condensed indole systems and based on the DFT/PBE0/6-311G(d,p)//6-311++G(d,p)
calculations suggested the most probable mechanisms for their formation.
Experimental
Section
General Information
The 1H and 13C NMR spectra were recorded on a Bruker Avance 600 spectrometer.
The chemical shifts are given with respect to the signal of SiMe4 as the internal standard. Attenuated total internal reflectance
IR (ATR-IR) spectra were measured on a Varian 3100 FT-IR Excalibur
Series spectrometer. HRMS spectra were registered on a Bruker UHR-TOF
Maxis Impact instrument. Chromatography was performed on columns packed
with Al2O3 (Brockmann activity II-III). The
melting point was measured on a Fisher–Johns apparatus. The
IR and NMR spectra were recorded using equipment of the Shared Use
Center “Molecular spectroscopy” of the Southern Federal
University.
X-ray Crystal Data
The elementary
cell parameters of
crystals and the three-dimensional intensity sets for compounds 7a, 8b, and 9 were obtained using
an auto diffractometer indicated in Table S1, in which information was collected on the main experimental and
crystallographic data. The structures were identified using the direct
method and refined by the least-squares matrix method with respect
to F2 using the SHELXTL program and anisotropic approximation for
nonhydrogen atoms.[25] The hydrogen atoms
in the crystal structures were localized in the Fourier syntheses
of the difference electron density. The coordinates and the isotropic
thermal parameters were subsequently refined using the rider method
(where it was possible).[26]Atomic
coordinates, full tables of bond lengths, bond angles, and thermal
parameters have been deposited at the Cambridge Crystallographic Data
Center (CCDC 1855413 (7a), CCDC 1855400 (8b), and CCDC 1855399 (9)).
Synthesis
2,3,3-Trimethylindolenine,
98% (1a), 1,1,2-trimethyl-1H-benzo[e]indole
(1b), 97%, and 2,3,3-trimethyl-3H-benzo[g]indole,
96%
(1c) were obtained from Alfa Aesar. 4,6-Di(tert-butyl)-3-nitro-1,2-benzoquinone 6 was prepared by the
method from ref (26).
Synthesis of 5,6a-Di(tert-butyl)-2-(3,3-dimethyl-3H-indol-2-yl)-1-N-oxy-3a,6a-dihydrocyclopenta[b]pyrrole-3,4-dione
(7a), 2-tert-Butyl-6,6-dimethyl-6H-pyrindino[1,2-a]indole-3,4-dione (8a), and
2-tert-Butoxy-4,6-di-tert-butyl-3-nitrophenol
(9)
A solution of 2,3,3-trimethylindoline 1a (1.59 g, 0.01 mol) and of 4,6-di(tert-butyl)-3-nitro-1,2-benzoquinone 6 (7.3 g, 0.02 mol) in glacial acetic acid (20 mL) was refluxed
for 10 h. After cooling, the reaction mixture was diluted with water
and extracted with dichloromethane (2 × 50 mL). The combined
organic layers were dried with anhydrous sodium sulfate, and the solvent
was removed in vacuo. The residue was subjected to column chromatography
(alumina, elution with 1:1 methylene chloride:ethyl acetate), and
the first two yellow fractions and the third orange fraction were
collected. The first fraction is compound 9 (Rf ∼ 0.9), the second fraction is compound 7a (Rf ∼ 0.65), and the
third fraction is compound 8a (Rf ∼ 0.15). After removal of the solvent in vacuo, the
residues were recrystallized from propane-2-ol.
Synthesis of 5,6a-Di(tert-butyl)-2-(1′,1′-dimethyl-1′H-benzo[e]indole-2-yl)-1-N-oxy-3a,6a-dihydrocyclopenta[b]pyrrole-3,4-dione
(7b) and 13,13-Dimethyl-9-tert-butyl-13H-pyrindino[1,2-a]benzo[e]indole-10,11-dione (8b)
A solution of 1,1,2-trimethyl-1H-benzo[e]indoline 1b (2.09 g, 0.01 mol) and of 4,6-di(tert-butyl)-3-nitro-1,2-benzoquinone 6 (7.3 g, 0.02 mol) in glacial acetic acid (20 mL) was refluxed
for 10 h. After cooling, the reaction mixture was diluted with water
and extracted with dichloromethane (2 × 100 mL). The combined
organic layers were dried with anhydrous sodium sulfate, and the solvent
was removed in vacuo. The residue was subjected to column chromatography
(alumina, elution with 1:1 methylene chloride:ethyl acetate) collecting
the first yellow and the second orange fractions. The first fraction
is compound 7b (Rf ∼
0.65), and the second fraction is compound 8b (Rf ∼ 0.15). After removal of the solvent
in vacuo, the residues were recrystallized from propane-2-ol.
Synthesis of
5,6a-Di(tert-butyl)-2-(3′,3′-dimethyl-3′H-benzo[g]indole-2-yl)-1-N-oxy-3a,6a-dihydrocyclopenta[b]pyrrole-3,4-dione
(7c) and 7,7-Dimethyl-11-tert-butyl-7H-pyrindino[1,2-a]benzo[g]indole-9,10-dione (8c)
A solution of 2,3,3-trimethyl-3H-benzo[g]indoline 1c (2.09 g, 0.01 mol) and of 4,6-di(tert-butyl)-3-nitro-1,2-benzoquinone 6 (7.3 g, 0.02 mol) in glacial acetic acid (20 mL) was refluxed
for 10 h. After cooling, the reaction mixture was diluted with water
and extracted with dichloromethane (2 × 100 mL). The combined
organic layers were dried with anhydrous sodium sulfate, and the solvent
was removed in vacuo. The residue was subjected to column chromatography
(alumina, elution with 1:1 methylene chloride:ethyl acetate) collecting
the first yellow and the second orange fractions. The first fraction
is compound 7c (Rf ∼
0.65), and the second fraction is compound 8c (Rf ∼ 0.15). After removal of the solvent
in vacuo, the residues were recrystallized from propane-2-ol.
Authors: Marie-Françoise Boussard; Sandrine Truche; Anne Rousseau-Rojas; Sylvie Briss; Sophie Descamps; Monique Droual; Michel Wierzbicki; Gilles Ferry; Valérie Audinot; Philippe Delagrange; Jean A Boutin Journal: Eur J Med Chem Date: 2006-01-18 Impact factor: 6.514
Authors: Alexey Kuznetsov; Anton Makarov; Aleksandr E Rubtsov; Alexander V Butin; Vladimir Gevorgyan Journal: J Org Chem Date: 2013-11-20 Impact factor: 4.354
Authors: Yury A Sayapin; Inna O Tupaeva; Alexandra A Kolodina; Eugeny A Gusakov; Vitaly N Komissarov; Igor V Dorogan; Nadezhda I Makarova; Anatoly V Metelitsa; Valery V Tkachev; Sergey M Aldoshin; Vladimir I Minkin Journal: Beilstein J Org Chem Date: 2015-11-12 Impact factor: 2.883