miR-374a-5p inhibits non-small cell lung cancer cell proliferation and migration via targeting NCK1.

Emerging studies have indicated that microRNAs (miRNAs/miRs) are involved in regulating non-small cell lung cancer (NSCLC)-associated processes. The present study aimed to evaluate the biological roles of miR-374a-5p in NSCLC. Using reverse transcription-quantitative PCR, the expression levels of miR-374a-5p were determined in NSCLC cells and a normal cell line. Functional experiments were performed to investigate the functions of miR-374a-5p in NSCLC. A luciferase activity reporter assay and rescue experiments were performed to validate NCK adaptor protein 1 (NCK1) as a functional target of miR-374a-5p. It was demonstrated that miR-374a-5p levels were decreased in NSCLC cell lines compared with those in a normal cell line. Furthermore, overexpression of miR-374a-5p inhibited NSCLC cell proliferation and migration in vitro. Of note, NCK1 overexpression reversed the effects of miR-375a-5p on NSCLC cell proliferation and migration. The present results confirmed the tumor suppressor role of miR-374a-5p via targeting NCK1 in NSCLC, indicating the importance of the miR-374a-5p/NCK1 axis in NSCLC. Copyright: © Guo et al.

Introduction

Lung cancer is a leading cause of cancer-associated death worldwide (1). Non-small cell lung cancer (NSCLC) accounts for 80-85% of all lung cancer cases (2). As the overall survival of patients with NSCLC remains poor, it is essential to identify novel treatment targets for NSCLC.

MicroRNAs (miRNAs/miRs) are a class of non-coding RNAs that lack the ability to code proteins but are capable of regulating gene expression by binding with the 3'-untranslated region (3'-UTR) of target mRNA (3). miRNAs have been reported to serve crucial roles in regulating numerous cellular processes, including proliferation, metastasis and differentiation, and they may have dual roles in carcinogenesis (4-6).

To date, the roles of miR-374a-5p in cancer progression have remained controversial (7-9). A previous study determined that the levels of miR-374a-5p, along with those of miR-195-5p, miR-199a-3p and miR-320a were significantly increased in patients with osteosarcoma (7). Another study revealed that miR-374a-5p was also elevated in patients with triple-negative breast cancer (8). Furthermore, in vitro and in vivo studies demonstrated that miR-374a-5p was able to regulate breast cancer cell proliferation and migration by directly targeting arrestin β1 (ARRB1), indicating an oncogenic role of miR-374-5p (8). By contrast, the expression of miR-374a-5p was reduced in esophageal squamous cell carcinoma and negatively regulated by LINC00473(9). As the significant roles of miR-374a-5p in various cancer types, including NSCLC, have remained elusive, the biological roles of miR-374-5p in NSCLC were herein investigated.

In the present study, the expression of miR-374a-5p was determined in NSCLC cell lines and a normal cell line. The effects of miR-374a-5p on NSCLC cell proliferation and migration were investigated in vitro. A bioinformatics target prediction and a luciferase reporter assay were utilized to identify and confirm the direct binding of miR-374a-5p with NCK adaptor protein 1 (NCK1). The present results may provide novel mechanisms underlying the carcinogenesis of NSCLC and a basis for targeted therapy.

Materials and methods

Cell culture

The NSCLC cell lines A549 and H1299 and the human bronchial epithelial cell line 16-HBE were purchased from the Cell Bank of the Chinese Academy of Sciences. These cells were incubated in RPMI-1640 medium (Invitrogen; Thermo Fisher Scientific, Inc.) containing 10% fetal bovine serum (Invitrogen; Thermo Fisher Scientific, Inc.) and 1% Penicillin-Streptomycin at 37˚C in a humidified incubator containing 5% CO2.

Cell transfection

NSCLC cells were transfected with 50 nM miR-374a-5p mimics (cat. no. miR10000727-1-5), negative control miRNA (miR-con; cat. no. miR1N0000001-1-5), 4 µg pcDNA3.1 containing the open reading frame of NCK1 (pNCK1) or negative control (pcDNA3.1) purchased from RiboBio with Lipofectamine® 2000 (Invitrogen; Thermo Fisher Scientific, Inc.) at 37˚C. After 48 h transfection, cells were collected for analysis.

Reverse transcription-quantitative PCR (RT-qPCR)

RT-qPCR was performed to determine the expression levels of miR-374a-5p or NCK1 in NSCLC cells and the normal cell line. In brief, total RNA from cultured cells was isolated with TRIzol® reagent (Invitrogen; Thermo Fisher Scientific, Inc.). To detect the expression levels of miR-374a-5p, cDNA was synthesized from RNA using the TaqMan MicroRNA Reverse Transcription kit (Applied Biosystems; Thermo Fisher Scientific, Inc.). For the analysis of NCK1 expression levels, the PrimeScript kit (Takara Biotechnology, Co., Ltd.) was used to synthesize cDNA from RNA. RT-qPCR was performed using SYBR Green Mix (Takara Biotechnology, Co., Ltd.) in an ABI 7500 system (Applied Biosystems; Thermo Fisher Scientific, Inc.) with the following thermocycling conditions: 95˚C for 10 min, followed by 40 cycles of 94˚C for 45 sec, 55˚C for 30 sec and 72˚C for 1 min. The primers used were as follows: miR-374a-5p forward, 5'-GCGCGCTTATAATACAACCTGA-3' and reverse, 5'-GTGCAGGGTCCGAGGT-3'; U6 small nuclear (sn)RNA forward, 5'-CTCGCTTCGGCAGCACA-3' and reverse, 5'-ACGCTTCACGAATTTGCGT-3'; NCK1 forward, 5'-GAACCATCACCTCCACAGTG-3' and reverse, 5'-AATCCCCTTCATGTCCTCTTTC-3'; GAPDH forward, 5'-GAAGGTGAAGGTCGGAGTC-3' and reverse, 5'-GAAGATGGTGATGGGATTTC-3'. Relative expression levels were calculated using the 2-ΔΔCq method using U6 snRNA or GAPDH as internal controls (10).

Cell proliferation assay

The cell proliferation rate was analyzed with a Cell Counting Kit-8 (CCK-8; Takara Biotechnology, Co., Ltd.). Cells were seeded in 96-well plates at 2x103 cells per well and incubated at 37˚C for 0, 24, 48 or 72 h. A total of, 10 µl CCK-8 reagent (Beyotime Institute of Biotechnology) was added to each well, followed by further incubation at 37˚C for 4 h. The absorbance was measured at 450 nm using a microplate reader.

Wound healing assay

Serum starved cells were seeded in 6-well plates at a density of 2x105 cells/well and incubated until ~100% confluence was reached. A sterile pipette tip was used to create a wound at the cell surface. The cells were then washed with PBS to remove the cell debris. The migration distance was measured at 0 and 24 h under a light microscope at a magnification of x200.

Bioinformatics analysis

Targets for miR-374a-5p were predicted using TargetScan (https://www.targetscan.org) and PicTar (http://pictar.mdc-berlin.de/).

Construction of luciferase activity vectors

According to the results of the bioinformatics prediction, NCK1 was selected as a putative target for miR-374a-5p. The wild-type (wt) 3'-UTR containing the binding site for miR-374a-5p was synthesized by GenScript, cloned into pGL3 vector (Promega Corporation) and named as NCK1-wt. Mutant (mt) 3'-UTR of NCK1 was constructed from NCK1-wt using a site-direct mutagenesis kit (Takara Biotechnology, Co., Ltd.) and named as NCK1-mt.

Dual-luciferase reporter assay

For the luciferase activity assay, NSCLC cells were co-transfected with NCK1-wt or NCK1-mt and miR-374a-5p mimics or miR-con using Lipofectamine 2000 with the pGL3 vector described above. After 48 h of transfection, the cells were lysed to analyze the relative luciferase activities using a dual-luciferase detection kit (Promega Corporation) following the manufacturer's protocol and normalized to Renilla luciferase.

Statistical analysis

GraphPad Prism 5 software (GraphPad Software, Inc.) was used for data analysis. Values are expressed as the mean ± standard deviation. Differences between groups were analyzed using Student's t-test or one-way analysis of variance with Tukey's post-hoc test. P<0.05 was considered to indicate statistical significance.

Results

miR-374a-5p is downregulated in NSCLC

First, miR-374a-5p expression levels in NSCLC cells were determined by RT-qPCR analysis. The results indicated that miR-374a-5p expression levels were significantly decreased in NSCLC cells in comparison with those in the normal cell line (Fig. 1A).

Figure 1

NCK1 is a target of miR-374a-5p in NSCLC. (A) miR-374a-5p expression in NSCLC cell lines (A549 and H1299) and a normal cell line (16-HBE). ***P<0.001 vs. the 16-HBE group. (B) Sequence alignment indicates the binding region between miR-374a-5p and the 3'-UTR of NCK1. (C) Luciferase activity in NSCLC cells transfected with luciferase activity vectors and synthetic miRNAs. ***P<0.001 vs. the miR-con group. (D) NCK1 expression in NSCLC cell lines and normal cell line. **P<0.01 and ***P<0.001 vs. the miR-con group (E) Effects of miR-374a-5p mimics on NCK1 expression. ***P<0.001 vs. the miR-con group. NCK1, NCK adaptor protein 1; miR-374a-5p, microRNA-374a-5p; NSCLC, non-small cell lung cancer; miR-con, negative control miR; UTR, untranslated region; wt, wild-type; mt, mutant; ns, no significance.

NCK1 is a direct target of miR-374a-5p in NSCLC

The bioinformatics tools predicted that NCK1 contains a putative binding site for miR-374a-5p (Fig. 1B). To investigate the interaction of miR-374a-5p and NCK1, luciferase reporter vectors were constructed. The results indicated that miR-374a-5p overexpression decreased the luciferase activity of cells transfected with NCK1-wt, but not of those transfected with NCK1-mt (Fig. 1C). RT-qPCR analysis indicated that NCK1 expression was increased in NSCLC cells compared with that in the normal cell line (Fig. 1D). In addition, NCK1 expression was significantly decreased in NSCLC cells transfected with miR-374a-5p mimics (Fig. 1E).

miR-374a-5p regulates NSCLC cell proliferation and migration via regulating NCK1

The biological roles of miR-374a-5p and NCK1 in NSCLC were investigated (Fig. 2). NSCLC cells were successfully transfected with miR-374a-5p mimics (Fig. 2A). The results of the CCK-8 assay presented in Fig. 2B illustrated that overexpression of miR-374a-5p decreased NSCLC cell proliferation. The wound-healing assay suggested that miR-374a-5p mimics significantly inhibited the migration ability of NSCLC cells (Fig. 2C). To test whether miR-374a-5p regulated NSCLC cell behavior via NCK1, rescue experiments were performed. The overexpression of NCK1 by pNCK1 was confirmed by RT-qPCR (Fig. 2D). The CCK-8 and wound-healing assays indicated that overexpression of NCK1 promoted NSCLC cell proliferation and migration (Fig. 2B and C, respectively). In addition, co-transfection of pNCK1 partially abrogated the effects of miR-374a-5p mimics on NSCLC cell behavior (Fig. 2B and C).

Figure 2

NCK1 reverses the effects of miR-374a-5p on NSCLC cell behaviors. (A) miR-374a-5p expression in NSCLC cells with miR-374a-5p mimics or miR-con transfection. ***P<0.001 vs. the miR-con group. (B) Cell proliferation was assessed. ***P<0.001 vs. the pcDNA3.1 group, *P<0.05 vs. the pcDNA3.1 group and ###P<0.001 vs. the miR-con group. (C) cell migration (magnification, x40) was determined. **P<0.01 vs. the pcDNA3.1 group, *P<0.05 vs. the pcDNA3.1 group and ###P<0.001 vs. the miR-con group. (D) NCK1 expression of NSCLC cells transfected with miR-374a-5p mimics, miR-con, pNCK1, pcDNA3.1 or pNCK1 and miR-374a-5p mimics is presented. ***P<0.001 and *P<0.05 vs. the pcDNA3.1 group. NCK1, NCK adaptor protein 1; pNCK1, NCK1 overexpression plasmid; pcDNA3.1, empty vector; miR-374a-5p, microRNA-374a-5p; NSCLC, non-small cell lung cancer; miR-con, negative control miR; OD, optical density.

Discussion

miRNAs may function as either oncogenic or tumor suppressor miRNAs in cancer (11). To date, numerous miRNAs have been indicated to regulate NSCLC progression. Among these, miR-199a-5p was indicated to be markedly decreased in NSCLC tissues (12). In addition, miR-199a-5p overexpression inhibited NSCLC cell proliferation by causing cell cycle arrest at the G1 phase via targeting mitogen-activated kinase kinase kinase 11(12). Furthermore, miR-221-3p expression was determined to be elevated in NSCLC tissues and cell lines (13). Overexpression of miR-221-3p was also indicated to promote cell cycle progression of NSCLC cells via targeting p27(13). Increased expression of miR-421 was identified in NSCLC tissues and cells, and its overexpression was able to promote cancer cell migration and invasion through HOP homeobox via the Wnt/β-catenin signaling pathway (14).

To the best of our knowledge, the present study was the first to reveal that miR-374a-5p was significantly downregulated in NSCLC cell lines compared with those in a normal cell line. Increased miR-374a-5p expression was also indicated to inhibit NSCLC cell proliferation and migration in vitro. Collectively, the present results suggested a tumor suppressor role of miR-374-5p in NSCLC, which is consistent with its role in esophageal squamous cell carcinoma (9).

miR-374a-5p exerts its effects in cancers by regulating the expression of tumor-specific genes (8,9). For instance, ARRB1 and spindlin 1 were identified as direct targets for miR-374a-5p in different cancer types (8,9). However, the targets of miR-374a-5p in NSCLC remain to be verified. By utilizing TargetScan and PicTar, NCK1 was identified as a putative target for miR-374a-5p. NCK1 is a protein that has been reported to be closely associated with cancer progression (15,16). For instance, NCK1 was determined to be a downstream effector of STAT3 and to promote colorectal cancer cell metastasis and angiogenesis via activating the p21-activated serine-threonine kinase (PAK1)/ERK pathway (15). Furthermore, NCK1 was indicated to promote cervical squamous carcinoma cell angiogenesis via the Rac1/PAK1/matrix metalloproteinase 2 signaling pathway (16). In the present study, the molecular mechanisms of the effects of miR-374a-5p on NSCLC cell behaviors were investigated. Rescue experiments were performed, which demonstrated that NCK1 overexpression partially reversed the effects of miR-374a-5p. These results indicated that miR-374a-5p exerted a tumor-suppressive role through NCK1 in NSCLC. However, as a limitation of the present study, the signaling pathways involved in the regulatory effect of miR-374a-5p on NSCLC cell behaviors were not further investigated.

In conclusion, the present study revealed the reduced expression status of miR-374a-5p in NSCLC and validated that miR-374a-5p functions as a tumor suppressor to regulate NSCLC progression via targeting NCK1. The study provided evidence to unravel a novel miR-374-5p and NCK1 axis in NSCLC, which may help to develop targeted therapies for NSCLC.