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An SEIR model with infected immigrants and recovered emigrants.

Peter J Witbooi1.   

Abstract

We present a deterministic SEIR model of the said form. The population in point can be considered as consisting of a local population together with a migrant subpopulation. The migrants come into the local population for a short stay. In particular, the model allows for a constant inflow of individuals into different classes and constant outflow of individuals from the R-class. The system of ordinary differential equations has positive solutions and the infected classes remain above specified threshold levels. The equilibrium points are shown to be asymptotically stable. The utility of the model is demonstrated by way of an application to measles.
© The Author(s) 2021.

Entities:  

Keywords:  Basic reproduction number; Imported infection; Measles; Recovered emigrant; Stable equilibrium

Year:  2021        PMID: 34306043      PMCID: PMC8283395          DOI: 10.1186/s13662-021-03488-5

Source DB:  PubMed          Journal:  Adv Differ Equ        ISSN: 1687-1839


Introduction

The fight against infectious diseases presents a major challenge to nations and a huge financial burden for governments. In recent months due to the emergence of COVID-19, there has been much publicity in the media around the role of mathematical modelling in the control of infectious diseases. Researchers in modelling have been working intensively around the effects of social distancing and travelling on the propagation of COVID-19 in the world, e.g. [2, 4, 13]. The World Health Organisation (WHO) has earmarked some diseases for eradication, see for instance [16]. In a region where a particular disease is well under control, it is possible that infected humans or vectors moving in from elsewhere can cause additional infections in the local population. Such additional infections can be disruptive to a local population in which there are systems in place to curb or eliminate the disease and where good progress is made in this regard. Examples of this phenomenon appear in [7, 11, 20]. It is important to identify and quantify the effects of such an infected inflow. In this paper we present a model for quantifying the effects of sporadic migration of infected individuals into and out of a region where there is good control and progress towards elimination. The model is of SEIR compartmental type. There are numerous papers in the literature that present models for the population dynamics of infectious diseases. This includes models which accommodate the inflow of infected individuals. Examples of such papers with inflow of the infective are [1, 3, 15, 18, 21, 23]. The current paper makes another contribution in this regard. The objective is to model a combined population consisting of a local population together with migrants who stay for a short while. This seems to be the first model that provides for recovered migrants also to depart from the population at a constant rate. In particular this model is meant to be utilised for quantifying the effect of infected migrants on the local population. We present a deterministic ordinary differential equations (ODE) model of four compartments for the combined population in Sect. 2. We prove that the inflow of infected migrants gives rise to positive threshold levels of the E-compartment and the I-compartment. Given the system of ODE, one can readily describe the dynamics of the migrant subpopulation. It is shown that the constant outflow of surviving migrants from the R-class is the correct number to balance the inflow, keeping the migrant population stable in the long run. In Sect. 3 we briefly do a similar investigation on an SIR model. In Sect. 4 we present an application to a measles problem, and in Sect. 5 we offer some concluding remarks.

The model

The population comprising both locals and migrants, at any time t, consists of individuals. We assume homogeneous mixing in the combined population. The population is divided into four compartments or classes. These are called the susceptible, exposed, infectious and removed classes. Their sizes, at any time t, are denoted by , , and respectively. These variables are functions of time. All the parameters mentioned hereafter will be considered to be nonnegative constants. The symbols , , and denote constant recruitment into the population either through birth or through immigration, into the classes S, E, I and R respectively. The birth rate of the local population is . Part of the newborns are vaccinated shortly after birth, causing flow into the class R at the rate , while the remaining newborns move into the class S at the rate . The inflow into the migrant subpopulation is at the rates and into the classes E and I respectively. There is an outflow of recovered migrants at the rate . Similarly as in [18], the force of infection in our model will be a function f which is twice differentiable, satisfying the following hypotheses: , if and only if . and . . An important consequence of hypotheses (H1)–(H3) on f is that, for each , we have , see [18, Proposition 4.1]. Another inequality implied by this set of axioms is that, for every , , i.e. . The rate of deaths due to the infectious disease in point is denoted by δ. Otherwise there is assumed to be a mortality rate μ in all the classes. The rate at which the latently infected become infectious is , and the rate at which the infectious recover is . We introduce two more numbers: The constant is the rate of outflow of migrants from the local population, and in particular, moving out of the R-class. We require to take the value The following system of equations is presented as our model.

The system of ODE for the model

with the initial conditions Let us write During the stay of the migrants in the local population, there will be mortalities, and these are accounted for in the constant . One can readily check that . This further implies in particular that . If we remove the fourth equation from the model system, then the remaining three equations will still follow the same trajectories. This approach is commonly followed in the literature, in particular when modelling viral infections, which are assumed to lead to permanent immunity and consequently no reinfection. See for instance [6, 17]. In that case the resulting SEI model is a special case of the model of Sigdel and McCluskey [18]. We shall refer to this subsystem of three equations as the SEI-special case. In particular, for the SEI-special case and with , the unique endemic equilibrium point exists and is globally asymptotically stable [18]. We write , and we introduce the sets It is important that solutions of our the model system are positive and bounded. We proceed with such investigations.

Proposition 2.1

Consider a number . Suppose that is a solution for system (2.1) with for all and . Then for all .

Proof

Therefore implies that for all . □ The proof by contradiction that we use towards Theorem 2.2 has been popularly used, for instance, in [12] and [14].

Theorem 2.2

Suppose that, for , is a solution of (2.1) with . Then for all . The right-hand sides of the equations in the model system constitute a function of which is single-valued, continuous and continuously differentiable with respect to the variables S, E, I and R. Therefore, see [9] for instance, global solutions to the model system do exist and are unique. The remainder of the proof is by contradiction. Thus let us suppose that the set is nonempty. Then Z has an infimum , and is the smallest time-value for which exits the set . Let us write and . Now we define a function by the formula Each of the four terms of the expression for are nonnegative, and . Therefore, In what follows we derive a contradiction to equation (4). We note that, for any time , . Now we proceed to finding an upper bound for the image set . We observe that, for any t with , Therefore we find where . Consequently, we have This contradicts the statement in equation (4). It means that such a finite number does not exist, and indeed that the variables are strictly positive over the entire interval of time . □

Remark 2.3

The system of ODE that describes the state of the migrant subpopulation is as follows: with the initial conditions , , . A similar argument as in Theorem 2.2 can be followed to prove that any solution of the system in Remark 2.3(a) will be positive, provided that , , . The unique equilibrium point has co-ordinates: , , . In model (2.1), if we replace with zero, i.e. if the only outflow from the model is death, then the minimum levels and would still hold. In fact one can investigate similar results in other models with the inflow of infection, provided that the initial values are above these minimum levels. If we take , , , then for every we shall have , and, in particular, . Therefore the choice of the constant outflow rate is the correct one to keep the migrant population size stable.

Proposition 2.4

The unique equilibrium point of the model in Remark 2.3(a) is globally asymptotically stable. Let us consider the function We can calculate its time derivative and simplify, eventually to obtain Thus is a Lyapunov function, and it follows that the equilibrium point is globally asymptotically stable. □ If , then there is no disease-free equilibrium point. Stability analysis of the SEI model is discussed in detail in [18]. If we consider the special case of model (2.1) for which , then a disease-free equilibrium point does exist. In this case the basic reproduction number of the disease can be calculated, and it takes the form Especially when working towards elimination of the disease, then it is also important to fully analyse this special case of zero influx of infected immigrants, see also [21].

Theorem 2.5

Suppose that in the model system we have . If , then the disease-free equilibrium is globally asymptotically stable. If , then the following inequality holds: We can find and fix two numbers and , which are sufficiently small, such that Now we define a function This function is positive-definite with respect to the disease-free equilibrium point. The derivative can be written as with and From hypotheses (H1)–(H3) it follows that, for each , we have . Therefore This means that . It follows that the function is negative-definite, hence that L is Lyapunov with respect to the disease-free equilibrium point. This completes the proof. □ In the application of this model, the basic reproduction number is quite significant. In particular, if , then it means that the migrants are the only hurdle towards elimination. This would mean that when there are no more infected immigrants, there may still be new infection cases in the local population, but the number of active cases will decrease steadily towards elimination. Let us write

Theorem 2.6

If , then system (2.1) has a unique equilibrium point. If and , then system (2.1) has a unique endemic equilibrium point. In each of cases (a) and (b), the following equations are satisfied: Let be the interval , where and let us define a function Then is continuous, , and is unbounded. We further note that and Furthermore, we have for all . So, in fact, has the following properties: Now we note that satisfies the following two equations: From these two equations, by elimination of and expressing in terms of , we obtain the equation for all , for all , for all , is unbounded. (a) Note that . If , then , and therefore . Therefore and due to the other properties of f and , there exists such that . This proves (a). (b) Suppose that . The inequality implies that Next we observe that Therefore, due to the properties of listed above, we conclude that there exists a unique number for which and . This completes the proof of (b). (c) We have proved that . The rest of (c) follows readily, and thus the proof of the theorem is complete. □

SIR model

The SIR model in this section is very similar to the SEIR model. The population comprising both locals and migrants, at any time t, consists of individuals. The constants , and denote recruitment rates into the classes S, I and R respectively. The birth rate of the local population is . Part of the newborns are vaccinated shortly after birth, giving rise to the inflow at the rate into class R, while the remaining newborns move into class S at the rate . The inflow into the migrant subpopulation is at the rate and all of these individuals are assumed to be infected. Again as in the SEIR case, we consider the force of infection to be a function f which is twice differentiable, satisfying hypotheses (H1), (H2) and (H3). The rate at which the infectious recover is α. The rate of deaths due to the specific infectious disease in point is denoted by δ. Otherwise there is a mortality rate μ in each of the classes. We introduce the numbers B and K below, and we assume as fixed that takes the specified value:

The system of ODE

with the initial conditions , , . Let be the set For the special case having , there is a disease-free equilibrium . Also for this special case we can calculate the basic reproduction number as

Theorem 3.1

Suppose that is a solution for the SIR model system with . Then for all . A proof for Theorem 3.1 can be obtained along the same lines as those of Proposition 2.1 and Theorem 2.2, and we omit the proof.

Remark 3.2

The system of ODE that describes the state of the migrant subpopulation is as follows: with the initial conditions , . Solutions of this system can be proved to be positive provided that , . The unique endemic equilibrium point has coordinates , and is globally asymptotically stable. From (c) we deduce that the choice of is the correct one to keep the migrant population size stable.

Notation 3.3

Henceforth in this section, for convenience we shall use the notation

Theorem 3.4

If , then the SIR model system has a unique equilibrium point. If and , then the SIR model system has a unique endemic equilibrium point. In each of these cases (a) and (b), Let be the interval Associated with the parameter , let us define a function Then in particular is continuous, and is unbounded. We further note that and For , we have . Therefore for all . So, in fact, has the following properties: Now we note that there are the following expressions for : Elimination of between these two equations leads to the equation for all , for all , for all , is unbounded. (a) Consider the case . Given g as above, note that . This, together with f being nonnegative and , implies that there exists a unique value for which . This proves (a). (b) Let us assume that and . The inequality implies that . Next we observe that Again in view of the properties of listed above, we conclude that there exists a unique value for which and . This completes the proof of (b). (c) This is clear. □

Theorem 3.5

The endemic equilibrium point of the SIR model system is locally asymptotically stable. We calculate the Jacobian J of the system at the equilibrium point, and then we obtain its characteristic equation to be as follows: with and as below: Hypotheses (H1), (H2) and (H3) on f ensure that, for every , we have Thus we can deduce the following: Therefore . Hence and , and consequently all the characteristic roots have negative real parts. This concludes the proof. □

Application to measles

Measles, a highly contagious viral disease, has been the cause of millions of deaths annually around the globe before vaccination started in 1963 [22]. Even now, with a safe and effective vaccine available, the prevalence and annual mortality due to measles is still startlingly high, with 140,000 mortalities in 2018. In 2019, more than 500,000 confirmed cases occurred globally amid devastating outbreaks [5]. Nevertheless, measles elimination programmes are in place in some countries, and in populations which are making progress it is especially important to be wary of infected people from elsewhere entering into the population. In what follows we consider measles in South Africa. For this application we utilise the SEIR model system, and for the force of infection f we choose the specific form For our simulations we use the Euler finite difference method. This methodology is still appropriate and a popular choice for modelling disease dynamics with ODEs, see for instance [4]. Most of the parameter values are either derived or taken directly from the literature as indicated in Table 1. The contact rate is fitted to data on South Africa.
Table 1

Numerical values of parameters

Param.DescriptionNumerical value (per week)Reference/comment
μmortality rate, excluding death directly due to measles0.000298/week per week[19]
δrate of human deaths due to measles0.019/week[5]
\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$\alpha _{1}$\end{document}α1transfer rate from E-class to I-class1.05/week[10]
\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$\alpha _{2}$\end{document}α2transfer rate from I-class to R-class (recovery rate)0.049/week[10]
\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$P_{0}$\end{document}P0local population size when disease-free57.79 million[24]
\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$K_{0}$\end{document}K0internal growth rate in class S0.25 \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$\mu P_{0}$\end{document}μP0/week[8]
\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$K_{1}$\end{document}K1rate of inflow of latently infected migrants0–15 p.a.variable
\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$K_{2}$\end{document}K2rate of inflow of infectious migrants0nominal
\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$K_{3}$\end{document}K3rate of vaccination of newborns0.75 \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$\mu P_{0}$\end{document}μP0/week[8]
bsaturation constant0.01/weekestimated
βcontact rate at disease-free state\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$1.409/P_{0}$\end{document}1.409/P0 per weekfitted from [8]
Numerical values of parameters The local population in 2018 was of size 58.49 million [24]. During 2018 there were 69 cases in South Africa [8]. We use this to estimate the contact rate. We take the initial point to be and , while million, with and split according to the vaccination levels. Using the model, we calculate the number of new local measles cases which are caused if over a period of one year we have different levels of influx of latently measles infected people. Firstly we consider a vaccination rate of 75%, and then we repeat these calculations for a different level of vaccination, 95%. The curves in Fig. 1 are increasing, revealing the extent to which an inflow of infected individuals can cause a surge in local infections. In Fig. 2, the decreasing curves show firstly how a higher vaccination coverage (95% versus 75%) will lead to much lower prevalence of measles. Note that the initial state for these computations is the equilibrium value corresponding to a lower vaccination coverage of (75%), hence the curves dropping when the vaccination rate increases. Then secondly, the curves show the effects of different intensities of influx of infectives, on the prevalence of measles. Table 2 shows the number of new measles cases for a given influx rate of infected migrants and for different levels of vaccination. The difference between 95% vaccination as compared to the current 75% of population vaccinated is dramatic, and this further underlines the call of the NICD for 95% of newborns to be vaccinated.
Figure 1

The trajectories of the active local infections I for different levels of annual imported infected cases, given that 75% of newborns are being vaccinated

Figure 2

The trajectories over a period of 16 weeks, of the active local infections I for different levels of annual imported infected cases. It is assumed that 95% of newborns are being vaccinated

Table 2

Model output for infection cases

Total number of imported casesVacc. 75% new casesVacc. 95% new cases
0591.8
550510.3
1088718.8
15122327.2
The trajectories of the active local infections I for different levels of annual imported infected cases, given that 75% of newborns are being vaccinated The trajectories over a period of 16 weeks, of the active local infections I for different levels of annual imported infected cases. It is assumed that 95% of newborns are being vaccinated Model output for infection cases

Conclusion

In the literature up to now, a population with two distinct components has been approached by way of a two-group model. In our situation we follow a much simpler single group approach. In conventional models with inflow of infected, the immigrants usually become part of the one single population, whereas in our current model we have found a way to quantify the rate of removal of migrants out of the population after a short visit. The new SEIR model with migration was shown in detail to comply to the necessary conventional requirements including positivity and boundedness of solutions, and stability of equilibrium points. We have also briefly explained an SIR model with migration to test the effect of the importation or inflow of infections on the local population in point. The SEIR model has been applied in a simple manner to a problem of imported measles infection. If more information is available, such as the initial state of the local population, we will be able to achieve improved accuracy in calculation of future projections. However, even only working around an equilibrium point as we did already gives a good idea of what to expect. This methodology shows promise of versatile applicability.
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