Literature DB >> 34302168

Expanding studies of chromosome structure and function in the era of T2T genomics.

Karen H Miga1,2, Beth A Sullivan3.   

Abstract

The recent accomplishment of a truly complete human genome has afforded a new view of chromosome structure and function that was limited 30 years ago. Here, we discuss the expansion of knowledge from the early cytological studies of the genome to the current high-resolution genomic, epigenetic and functional maps that have been achieved by recent technology and computational advances. These studies have revealed unexpected complexities of genome organization and function and uncovered new views of fundamental chromosomal elements. Comprehensive genomic maps will enable accurate diagnosis of human diseases caused by altered chromosome structure and function, facilitate development of chromosome-based therapies and shape the future of preventative medicine and healthcare.
© The Author(s) 2021. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

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Year:  2021        PMID: 34302168      PMCID: PMC8631062          DOI: 10.1093/hmg/ddab214

Source DB:  PubMed          Journal:  Hum Mol Genet        ISSN: 0964-6906            Impact factor:   5.121


  77 in total

Review 1.  Chromosome territories--a functional nuclear landscape.

Authors:  Thomas Cremer; Marion Cremer; Steffen Dietzel; Stefan Müller; Irina Solovei; Stanislav Fakan
Journal:  Curr Opin Cell Biol       Date:  2006-05-09       Impact factor: 8.382

2.  Pregnancy outcome in carriers of Robertsonian translocations.

Authors:  Kathelijn Keymolen; Kim Van Berkel; Anniek Vorsselmans; Catherine Staessen; Inge Liebaers
Journal:  Am J Med Genet A       Date:  2011-09-09       Impact factor: 2.802

3.  Genomic size of CENP-A domain is proportional to total alpha satellite array size at human centromeres and expands in cancer cells.

Authors:  Lori L Sullivan; Christopher D Boivin; Brankica Mravinac; Ihn Young Song; Beth A Sullivan
Journal:  Chromosome Res       Date:  2011-04-12       Impact factor: 5.239

4.  In situ genome sequencing resolves DNA sequence and structure in intact biological samples.

Authors:  Andrew C Payne; Zachary D Chiang; Paul L Reginato; Edward S Boyden; Jason D Buenrostro; Fei Chen; Sarah M Mangiameli; Evan M Murray; Chun-Chen Yao; Styliani Markoulaki; Andrew S Earl; Ajay S Labade; Rudolf Jaenisch; George M Church
Journal:  Science       Date:  2020-12-31       Impact factor: 47.728

5.  Human chromosome-specific aneuploidy is influenced by DNA-dependent centromeric features.

Authors:  Marie Dumont; Riccardo Gamba; Pierre Gestraud; Sjoerd Klaasen; Joseph T Worrall; Sippe G De Vries; Vincent Boudreau; Catalina Salinas-Luypaert; Paul S Maddox; Susanne Ma Lens; Geert Jpl Kops; Sarah E McClelland; Karen H Miga; Daniele Fachinetti
Journal:  EMBO J       Date:  2019-11-21       Impact factor: 11.598

6.  Super-resolution chromatin tracing reveals domains and cooperative interactions in single cells.

Authors:  Bogdan Bintu; Leslie J Mateo; Jun-Han Su; Nicholas A Sinnott-Armstrong; Mirae Parker; Seon Kinrot; Kei Yamaya; Alistair N Boettiger; Xiaowei Zhuang
Journal:  Science       Date:  2018-10-26       Impact factor: 47.728

7.  Haplotype diversity and sequence heterogeneity of human telomeres.

Authors:  Kirill Grigorev; Jonathan Foox; Daniela Bezdan; Daniel Butler; Jared J Luxton; Jake Reed; Miles J McKenna; Lynn Taylor; Kerry A George; Cem Meydan; Susan M Bailey; Christopher E Mason
Journal:  Genome Res       Date:  2021-06-23       Impact factor: 9.043

8.  3D genomics across the tree of life reveals condensin II as a determinant of architecture type.

Authors:  Claire Hoencamp; Olga Dudchenko; Ahmed M O Elbatsh; Sumitabha Brahmachari; Jonne A Raaijmakers; Tom van Schaik; Ángela Sedeño Cacciatore; Vinícius G Contessoto; Roy G H P van Heesbeen; Bram van den Broek; Aditya N Mhaskar; Hans Teunissen; Brian Glenn St Hilaire; David Weisz; Arina D Omer; Melanie Pham; Zane Colaric; Zhenzhen Yang; Suhas S P Rao; Namita Mitra; Christopher Lui; Weijie Yao; Ruqayya Khan; Leonid L Moroz; Andrea Kohn; Judy St Leger; Alexandria Mena; Karen Holcroft; Maria Cristina Gambetta; Fabian Lim; Emma Farley; Nils Stein; Alexander Haddad; Daniel Chauss; Ayse Sena Mutlu; Meng C Wang; Neil D Young; Evin Hildebrandt; Hans H Cheng; Christopher J Knight; Theresa L U Burnham; Kevin A Hovel; Andrew J Beel; Pierre-Jean Mattei; Roger D Kornberg; Wesley C Warren; Gregory Cary; José Luis Gómez-Skarmeta; Veronica Hinman; Kerstin Lindblad-Toh; Federica Di Palma; Kazuhiro Maeshima; Asha S Multani; Sen Pathak; Liesl Nel-Themaat; Richard R Behringer; Parwinder Kaur; René H Medema; Bas van Steensel; Elzo de Wit; José N Onuchic; Michele Di Pierro; Erez Lieberman Aiden; Benjamin D Rowland
Journal:  Science       Date:  2021-05-28       Impact factor: 63.714

9.  Cell-cycle dynamics of chromosomal organization at single-cell resolution.

Authors:  Takashi Nagano; Yaniv Lubling; Csilla Várnai; Carmel Dudley; Wing Leung; Yael Baran; Netta Mendelson Cohen; Steven Wingett; Peter Fraser; Amos Tanay
Journal:  Nature       Date:  2017-07-05       Impact factor: 49.962

10.  Haplotypes spanning centromeric regions reveal persistence of large blocks of archaic DNA.

Authors:  Sasha A Langley; Karen H Miga; Gary H Karpen; Charles H Langley
Journal:  Elife       Date:  2019-06-25       Impact factor: 8.140

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  1 in total

1.  Shaping centromeres to resist mitotic spindle forces.

Authors:  Josh Lawrimore; Kerry Bloom
Journal:  J Cell Sci       Date:  2022-02-18       Impact factor: 5.285

  1 in total

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