Literature DB >> 34297552

Mechanisms and Dynamics of Synthetic and Biosynthetic Formation of Delitschiapyrones: Solvent Control of Ambimodal Periselectivity.

Yike Zou1, K N Houk1.   

Abstract

The mechanism and dynamics for the formation of the delitschiapyrone family of natural products are studied by density functional theory (DFT) calculations and quasiclassical molecular dynamics simulations with DFT and xTB. In the uncatalyzed reaction, delitschiapyrones A and B are formed by Diels-Alder reactions through a single transition state and a post-transition state bifurcation that favors formation of delitschiapyrone B. In water and most likely in the enzyme, the acidic hydroxyquinone ionizes, and the resulting conjugate base undergoes cycloaddition preferentially to delitschiapyrone A. We demonstrate a new type of biosynthetic transformation and variable selectivity from a (4 + 2)/(4 + 3) ambimodal transition state.

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Year:  2021        PMID: 34297552      PMCID: PMC9307257          DOI: 10.1021/jacs.1c05293

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   16.383


  38 in total

1.  Putative Diels-Alder-Catalyzed Cyclization during the Biosynthesis of Lovastatin.

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2.  GFN2-xTB-An Accurate and Broadly Parametrized Self-Consistent Tight-Binding Quantum Chemical Method with Multipole Electrostatics and Density-Dependent Dispersion Contributions.

Authors:  Christoph Bannwarth; Sebastian Ehlert; Stefan Grimme
Journal:  J Chem Theory Comput       Date:  2019-02-11       Impact factor: 6.006

3.  Dynamics and the Regiochemistry of Nitration of Toluene.

Authors:  Yexenia Nieves-Quinones; Daniel A Singleton
Journal:  J Am Chem Soc       Date:  2016-11-10       Impact factor: 15.419

4.  [Biosynthesis of naphthoquinone pigments by fungi of the genus Fusarium].

Authors:  A G Medentsev; A Iu Arinbasarova; V K Akimenko
Journal:  Prikl Biokhim Mikrobiol       Date:  2005 Sep-Oct

5.  Dynamic origin of the stereoselectivity of a nucleophilic substitution reaction.

Authors:  Xavier S Bogle; Daniel A Singleton
Journal:  Org Lett       Date:  2012-04-27       Impact factor: 6.005

6.  A plant phytotoxin, solanapyrone A, is an inhibitor of DNA polymerase beta and lambda.

Authors:  Yoshiyuki Mizushina; Shinji Kamisuki; Nobuyuki Kasai; Noriko Shimazaki; Masaharu Takemura; Hitomi Asahara; Stuart Linn; Shonen Yoshida; Akio Matsukage; Osamu Koiwai; Fumio Sugawara; Hiromi Yoshida; Kengo Sakaguchi
Journal:  J Biol Chem       Date:  2001-10-24       Impact factor: 5.157

Review 7.  New knowledge about the biosynthesis of lovastatin and its production by fermentation of Aspergillus terreus.

Authors:  Javier Barrios-González; Ailed Pérez-Sánchez; María Esmeralda Bibián
Journal:  Appl Microbiol Biotechnol       Date:  2020-09-15       Impact factor: 4.813

8.  Bioinspired Total Synthesis of Delitschiapyrone A.

Authors:  Kazuki Kurasawa; Eunsang Kwon; Shigefumi Kuwahara; Masaru Enomoto
Journal:  Org Lett       Date:  2018-07-13       Impact factor: 6.005

9.  Influence of water and enzyme SpnF on the dynamics and energetics of the ambimodal [6+4]/[4+2] cycloaddition.

Authors:  Zhongyue Yang; Song Yang; Peiyuan Yu; Yanwei Li; Charles Doubleday; Jiyong Park; Ashay Patel; Byung-Sun Jeon; William K Russell; Hung-Wen Liu; David H Russell; Kendall N Houk
Journal:  Proc Natl Acad Sci U S A       Date:  2018-01-18       Impact factor: 11.205

10.  Comparative transcriptome analysis to identify candidate genes involved in 2-methoxy-1,4-naphthoquinone (MNQ) biosynthesis in Impatiens balsamina L.

Authors:  Lian Chee Foong; Jian Yi Chai; Anthony Siong Hock Ho; Brandon Pei Hui Yeo; Yang Mooi Lim; Sheh May Tam
Journal:  Sci Rep       Date:  2020-09-30       Impact factor: 4.379

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  1 in total

Review 1.  Biosynthesis of Fungal Natural Products Involving Two Separate Pathway Crosstalk.

Authors:  Guangzhi Dai; Qiyao Shen; Youming Zhang; Xiaoying Bian
Journal:  J Fungi (Basel)       Date:  2022-03-21
  1 in total

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