Literature DB >> 34295451

DIFFEOMORPHIC REGISTRATION FOR RETINOTOPIC MAPPING VIA QUASICONFORMAL MAPPING.

Yanshuai Tu1, Duyan Ta1, Xianfeng David Gu2,3, Zhong-Lin Lu4,5, Yalin Wang1.   

Abstract

Human visual cortex is organized into several functional regions/areas. Identifying these visual areas of the human brain (i.e., V1, V2, V4, etc) is an important topic in neurophysiology and vision science. Retinotopic mapping via functional magnetic resonance imaging (fMRI) provides a non-invasive way of defining the boundaries of the visual areas. It is well known from neurophysiology studies that retinotopic mapping is diffeomorphic within each local area (i.e. locally smooth, differentiable, and invertible). However, due to the low signal-noise ratio of fMRI, the retinotopic maps from fMRI are often not diffeomorphic, making it difficult to delineate the boundaries of visual areas. The purpose of this work is to generate diffeomorphic retinotopic maps and improve the accuracy of the retinotopic atlas from fMRI measurements through the development of a specifically designed registration procedure. Although there are sophisticated existing cortical surface registration methods, most of them cannot fully utilize the features of retinotopic mapping. By considering unique retinotopic mapping features, we form a quasiconformal geometry-based registration model and solve it with efficient numerical methods. We compare our registration with several popular methods on synthetic data. The results demonstrate that the proposed registration is superior to conventional methods for the registration of retinotopic maps. The application of our method to a real retinotopic mapping dataset also results in much smaller registration errors.

Entities:  

Keywords:  Beltrami Coefficient; Diffeomorphic Registration; Retinotopic Mapping

Year:  2020        PMID: 34295451      PMCID: PMC8293962          DOI: 10.1109/isbi45749.2020.9098386

Source DB:  PubMed          Journal:  Proc IEEE Int Symp Biomed Imaging        ISSN: 1945-7928


  13 in total

1.  fMRI retinotopic mapping--step by step.

Authors:  J Warnking; M Dojat; A Guérin-Dugué; C Delon-Martin; S Olympieff; N Richard; A Chéhikian; C Segebarth
Journal:  Neuroimage       Date:  2002-12       Impact factor: 6.556

2.  fMRI retinotopic mapping at 3 T: benefits gained from correcting the spatial distortions due to static field inhomogeneity.

Authors:  Flor Vasseur; Chantal Delon-Martin; Cécile Bordier; Jan Warnking; Laurent Lamalle; Christoph Segebarth; Michel Dojat
Journal:  J Vis       Date:  2010-10-26       Impact factor: 2.240

Review 3.  Advances in functional and structural MR image analysis and implementation as FSL.

Authors:  Stephen M Smith; Mark Jenkinson; Mark W Woolrich; Christian F Beckmann; Timothy E J Behrens; Heidi Johansen-Berg; Peter R Bannister; Marilena De Luca; Ivana Drobnjak; David E Flitney; Rami K Niazy; James Saunders; John Vickers; Yongyue Zhang; Nicola De Stefano; J Michael Brady; Paul M Matthews
Journal:  Neuroimage       Date:  2004       Impact factor: 6.556

4.  Population receptive field estimates in human visual cortex.

Authors:  Serge O Dumoulin; Brian A Wandell
Journal:  Neuroimage       Date:  2007-09-29       Impact factor: 6.556

5.  Diffeomorphic demons: efficient non-parametric image registration.

Authors:  Tom Vercauteren; Xavier Pennec; Aymeric Perchant; Nicholas Ayache
Journal:  Neuroimage       Date:  2008-11-07       Impact factor: 6.556

6.  Cortical surface-based analysis. II: Inflation, flattening, and a surface-based coordinate system.

Authors:  B Fischl; M I Sereno; A M Dale
Journal:  Neuroimage       Date:  1999-02       Impact factor: 6.556

7.  Computational anatomy and functional architecture of striate cortex: a spatial mapping approach to perceptual coding.

Authors:  E L Schwartz
Journal:  Vision Res       Date:  1980       Impact factor: 1.886

Review 8.  Imaging retinotopic maps in the human brain.

Authors:  Brian A Wandell; Jonathan Winawer
Journal:  Vision Res       Date:  2010-08-06       Impact factor: 1.886

9.  Modeling magnification and anisotropy in the primate foveal confluence.

Authors:  Mark M Schira; Christopher W Tyler; Branka Spehar; Michael Breakspear
Journal:  PLoS Comput Biol       Date:  2010-01-29       Impact factor: 4.475

10.  The Human Connectome Project 7 Tesla retinotopy dataset: Description and population receptive field analysis.

Authors:  Noah C Benson; Keith W Jamison; Michael J Arcaro; An T Vu; Matthew F Glasser; Timothy S Coalson; David C Van Essen; Essa Yacoub; Kamil Ugurbil; Jonathan Winawer; Kendrick Kay
Journal:  J Vis       Date:  2018-12-03       Impact factor: 2.240

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  3 in total

1.  Topological Receptive Field Model for Human Retinotopic Mapping.

Authors:  Yanshuai Tu; Duyan Ta; Zhong-Lin Lu; Yalin Wang
Journal:  Med Image Comput Comput Assist Interv       Date:  2021-09-21

2.  Quantitative characterization of the human retinotopic map based on quasiconformal mapping.

Authors:  Duyan Ta; Yanshuai Tu; Zhong-Lin Lu; Yalin Wang
Journal:  Med Image Anal       Date:  2021-10-04       Impact factor: 13.828

3.  Topology-preserving smoothing of retinotopic maps.

Authors:  Yanshuai Tu; Duyan Ta; Zhong-Lin Lu; Yalin Wang
Journal:  PLoS Comput Biol       Date:  2021-08-02       Impact factor: 4.779

  3 in total

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