Literature DB >> 34293295

Bridging neuronal correlations and dimensionality reduction.

Akash Umakantha1, Rudina Morina2, Benjamin R Cowley3, Adam C Snyder4, Matthew A Smith5, Byron M Yu6.   

Abstract

Two commonly used approaches to study interactions among neurons are spike count correlation, which describes pairs of neurons, and dimensionality reduction, applied to a population of neurons. Although both approaches have been used to study trial-to-trial neuronal variability correlated among neurons, they are often used in isolation and have not been directly related. We first established concrete mathematical and empirical relationships between pairwise correlation and metrics of population-wide covariability based on dimensionality reduction. Applying these insights to macaque V4 population recordings, we found that the previously reported decrease in mean pairwise correlation associated with attention stemmed from three distinct changes in population-wide covariability. Overall, our work builds the intuition and formalism to bridge between pairwise correlation and population-wide covariability and presents a cautionary tale about the inferences one can make about population activity by using a single statistic, whether it be mean pairwise correlation or dimensionality.
Copyright © 2021 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  dimensionality reduction; neuronal population; spatial attention; spike count correlation; visual area V4

Mesh:

Year:  2021        PMID: 34293295      PMCID: PMC8505167          DOI: 10.1016/j.neuron.2021.06.028

Source DB:  PubMed          Journal:  Neuron        ISSN: 0896-6273            Impact factor:   18.688


  102 in total

1.  Neuronal interactions improve cortical population coding of movement direction.

Authors:  E M Maynard; N G Hatsopoulos; C L Ojakangas; B D Acuna; J N Sanes; R A Normann; J P Donoghue
Journal:  J Neurosci       Date:  1999-09-15       Impact factor: 6.167

2.  Global cognitive factors modulate correlated response variability between V4 neurons.

Authors:  Douglas A Ruff; Marlene R Cohen
Journal:  J Neurosci       Date:  2014-12-03       Impact factor: 6.167

3.  Laminar dependence of neuronal correlations in visual cortex.

Authors:  Matthew A Smith; Xiaoxuan Jia; Amin Zandvakili; Adam Kohn
Journal:  J Neurophysiol       Date:  2012-11-28       Impact factor: 2.714

Review 4.  Cortical state and attention.

Authors:  Kenneth D Harris; Alexander Thiele
Journal:  Nat Rev Neurosci       Date:  2011-08-10       Impact factor: 34.870

5.  Neuronal Modulations in Visual Cortex Are Associated with Only One of Multiple Components of Attention.

Authors:  Thomas Zhihao Luo; John H R Maunsell
Journal:  Neuron       Date:  2015-06-03       Impact factor: 17.173

6.  Principles of connectivity among morphologically defined cell types in adult neocortex.

Authors:  Xiaolong Jiang; Shan Shen; Cathryn R Cadwell; Philipp Berens; Fabian Sinz; Alexander S Ecker; Saumil Patel; Andreas S Tolias
Journal:  Science       Date:  2015-11-27       Impact factor: 47.728

7.  Constraints on neural redundancy.

Authors:  Aaron P Batista; Byron M Yu; Steven M Chase; Jay A Hennig; Matthew D Golub; Peter J Lund; Patrick T Sadtler; Emily R Oby; Kristin M Quick; Stephen I Ryu; Elizabeth C Tyler-Kabara
Journal:  Elife       Date:  2018-08-15       Impact factor: 8.140

8.  Neural population dynamics during reaching.

Authors:  Mark M Churchland; John P Cunningham; Matthew T Kaufman; Justin D Foster; Paul Nuyujukian; Stephen I Ryu; Krishna V Shenoy
Journal:  Nature       Date:  2012-07-05       Impact factor: 49.962

9.  Vacillation, indecision and hesitation in moment-by-moment decoding of monkey motor cortex.

Authors:  Matthew T Kaufman; Mark M Churchland; Stephen I Ryu; Krishna V Shenoy
Journal:  Elife       Date:  2015-05-05       Impact factor: 8.140

10.  Attention-induced variance and noise correlation reduction in macaque V1 is mediated by NMDA receptors.

Authors:  Jose L Herrero; Marc A Gieselmann; Mehdi Sanayei; Alexander Thiele
Journal:  Neuron       Date:  2013-05-22       Impact factor: 17.173

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  3 in total

Review 1.  The structures and functions of correlations in neural population codes.

Authors:  Stefano Panzeri; Monica Moroni; Houman Safaai; Christopher D Harvey
Journal:  Nat Rev Neurosci       Date:  2022-06-22       Impact factor: 38.755

Review 2.  The population doctrine in cognitive neuroscience.

Authors:  R Becket Ebitz; Benjamin Y Hayden
Journal:  Neuron       Date:  2021-08-19       Impact factor: 18.688

3.  Attention improves information flow between neuronal populations without changing the communication subspace.

Authors:  Ramanujan Srinath; Douglas A Ruff; Marlene R Cohen
Journal:  Curr Biol       Date:  2021-10-25       Impact factor: 10.834

  3 in total

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